View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11581_low_42 (Length: 295)
Name: NF11581_low_42
Description: NF11581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11581_low_42 |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 12 - 284
Target Start/End: Original strand, 25300011 - 25300283
Alignment:
| Q |
12 |
atgaaccattacatcatattgcactaatgttgccactttaggcatgatggatataagtataagtgatttacctgatttcggtaagagttattgttaaatt |
111 |
Q |
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|||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25300011 |
atgaaccattacatcatattgcaccaatgctgccactttaggcatgatggatataagtataagtgatttacctgatttcggtaagagttattgttaaatt |
25300110 |
T |
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| Q |
112 |
ctgatgaatccattatagcgtgaaagtccccatattgatatggggttcccaaacaaagcatagaagattccacctctttnnnnnnntttgttgtctctga |
211 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |
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| T |
25300111 |
ctgatgaatccattatagcgtgaaagtcaccatattgatatggggttcccaaacaaagcatagaagattccacctctttagaaaaatttgttgtctcgga |
25300210 |
T |
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| Q |
212 |
atgcaaaagagacgtatttgagtgaaccttgatgtttggggtaagttgagaggctattgagtttggttggttg |
284 |
Q |
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||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||| |
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| T |
25300211 |
atgcaaaagagacatatttgagtgaaccttgatattcggggtaagttgagaggctattgagttgggttggttg |
25300283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 48 - 224
Target Start/End: Complemental strand, 25275396 - 25275220
Alignment:
| Q |
48 |
tttaggcatgatggatataagtataagtgatttacctgatttcggtaagagttattgttaaattctgatgaatccattatagcgtgaaagtccccatatt |
147 |
Q |
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|||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||| |||||||||| |||||||||||| ||| |
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| T |
25275396 |
tttaggcatggtggatataagtataagtgatttacttgatttcggtaagagttgttgttcaattctgatgaacccattatagcttgaaagtccccagatt |
25275297 |
T |
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| Q |
148 |
gatatggggttcccaaacaaagcatagaagattccacctctttnnnnnnntttgttgtctctgaatgcaaaagagac |
224 |
Q |
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| T |
25275296 |
gatatggggttcccaaacaaagcaaagaagatttcacctctttaggaaaatttgttgtctttgaaagcaaaaaagac |
25275220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 51 - 224
Target Start/End: Original strand, 25276542 - 25276715
Alignment:
| Q |
51 |
aggcatgatggatataagtataagtgatttacctgatttcggtaagagttattgttaaattctgatgaatccattatagcgtgaaagtccccatattgat |
150 |
Q |
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|||||| ||||||| ||||||||||||||||| ||||||||||||||||| ||||| ||||||||| || ||||||||| |||||||||||| |||||| |
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| T |
25276542 |
aggcataatggatacaagtataagtgatttacttgatttcggtaagagttgttgttcaattctgataaacccattataggttgaaagtccccaaattgat |
25276641 |
T |
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| Q |
151 |
atggggttcccaaacaaagcatagaagattccacctctttnnnnnnntttgttgtctctgaatgcaaaagagac |
224 |
Q |
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| T |
25276642 |
atggggttcccaaacaaagcaaagaagattccacctctttagaaaaatttgttgtctctgaattcaaaagagac |
25276715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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