View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11581_low_43 (Length: 294)

Name: NF11581_low_43
Description: NF11581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11581_low_43
NF11581_low_43
[»] chr2 (3 HSPs)
chr2 (1-279)||(6943071-6943348)
chr2 (41-206)||(32456325-32456490)
chr2 (5-171)||(36127334-36127500)
[»] chr7 (2 HSPs)
chr7 (1-206)||(15578967-15579172)
chr7 (1-206)||(1272570-1272775)
[»] chr1 (1 HSPs)
chr1 (1-206)||(26172872-26173076)
[»] chr4 (2 HSPs)
chr4 (1-112)||(38262348-38262459)
chr4 (49-206)||(51608755-51608912)
[»] chr3 (2 HSPs)
chr3 (73-198)||(13882651-13882772)
chr3 (46-96)||(13882599-13882649)
[»] scaffold0007 (1 HSPs)
scaffold0007 (13-90)||(242528-242605)


Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 6943348 - 6943071
Alignment:
Q  1 taggcattgtcgtagtaactgacttggctaggcaaacttgccccactttattaaggagattacctttccaagttgagagtcttctatgcatcttctctaa 100  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  6943348 taggcattgccgtagtaactgacttggctaggcaaacttgccccactttattaaggagattaccttttcaagttgagagtcttctatacatcttctctaa 6943249  T
Q  101 aatataatcatatgtatctttgatagctcgaccttgtatcaaaggaaaatccaagtcgtgccccaaattggccacaaaacggatagaggagatttcttta 200  Q
    |||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  6943248 aatataatcatatgtatctttggtagctcgaccatgtatcaaaggaaaatccaagtcgcgccccaaattggccacaaaacagatagaggagatttcttta 6943149  T
Q  201 atac-ttgtttaacttgctatattattataataagtaataacaagtgtgacaga-tttcttttgtagtgataaaaataatt 279  Q
    |||| |||||||||||||||   ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  6943148 atactttgtttaacttgcta---tattataataagtaataacaagtgtgacagattttcttttgtagtgataaaaataatt 6943071  T

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Target: chr2; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 41 - 206
Target Start/End: Original strand, 32456325 - 32456490
Alignment:
Q  41 ccccactttattaaggagattacctttccaagttgagagtcttctatgcatcttctctaaaatataatcatatgtatctttgatagctcgaccttgtatc 140  Q
    |||| |||||||||||||||| | ||||||||| ||||| ||| | | ||| ||||||||||||||| ||||||||| | |  |||||||||||||||||    
T  32456325 ccccgctttattaaggagattgcatttccaagtcgagagccttttgtacattttctctaaaatataaccatatgtatttgtagtagctcgaccttgtatc 32456424  T
Q  141 aaaggaaaatccaagtcgtgccccaaattggccacaaaacggatagaggagatttctttaatactt 206  Q
    ||||||||  |||||| |||||||||||||||||| || || ||||| ||||||||||||||||||    
T  32456425 aaaggaaatcccaagtagtgccccaaattggccacgaagcgaatagaagagatttctttaatactt 32456490  T

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Target: chr2; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 5 - 171
Target Start/End: Original strand, 36127334 - 36127500
Alignment:
Q  5 cattgtcgtagtaactgacttggctaggcaaacttgccccactttattaaggagattacctttccaagttgagagtcttctatgcatcttctctaaaata 104  Q
    |||||||||||||||||| ||||  ||||||||  || |||||||||||||||| ||| ||||| |||||||||||||| ||||||| ||||||||||||    
T  36127334 cattgtcgtagtaactgatttggtcaggcaaaccagctccactttattaaggaggttatctttctaagttgagagtcttttatgcatgttctctaaaata 36127433  T
Q  105 taatcatatgtatctttgatagctcgaccttgtatcaaaggaaaatccaagtcgtgccccaaattgg 171  Q
     |||||||  |||||||  ||  || || ||||| ||||| |||| |||||| |||| ||| |||||    
T  36127434 caatcatacatatctttagtaattcaacattgtagcaaagaaaaacccaagtagtgctccatattgg 36127500  T

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Target: chr7 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 15579172 - 15578967
Alignment:
Q  1 taggcattgtcgtagtaactgacttggctaggcaaacttgccccactttattaaggagattacctttccaagttgagagtcttctatgcatcttctctaa 100  Q
    |||||||||  ||||||||||||||||||||||||||  || || ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  15579172 taggcattgctgtagtaactgacttggctaggcaaacccgctccgctttattaaggagattagctttccaagttgagagtcttctgtgcatcttctctaa 15579073  T
Q  101 aatataatcatatgtatctttgatagctcgaccttgtatcaaaggaaaatccaagtcgtgccccaaattggccacaaaacggatagaggagatttcttta 200  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||| |||||||||||||    
T  15579072 aatataatcatatgtatctttggtagctcgaccttgtatcaaaggaaaacccaagtagtgtcccaaattggccacaaaacggataggggagatttcttta 15578973  T
Q  201 atactt 206  Q
    ||||||    
T  15578972 atactt 15578967  T

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Target: chr7; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 1272775 - 1272570
Alignment:
Q  1 taggcattgtcgtagtaactgacttggctaggcaaacttgccccactttattaaggagattacctttccaagttgagagtcttctatgcatcttctctaa 100  Q
    ||||||||| || ||||||||||||||||| | |||   |||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1272775 taggcattgccgcagtaactgacttggctaagaaaatccgccccgttttattaaggagattacctttccaagttgagagtcttctatgcatcttctctaa 1272676  T
Q  101 aatataatcatatgtatctttgatagctcgaccttgtatcaaaggaaaatccaagtcgtgccccaaattggccacaaaacggatagaggagatttcttta 200  Q
     ||||||||||| ||||||||| |||||| ||||||||||||||||||| |||||| ||||| |||||||||||| |||| |||||| || |||||||||    
T  1272675 tatataatcataagtatctttggtagctccaccttgtatcaaaggaaaacccaagtagtgcctcaaattggccaccaaacagatagatgatatttcttta 1272576  T
Q  201 atactt 206  Q
    ||||||    
T  1272575 atactt 1272570  T

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Target: chr1 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 26173076 - 26172872
Alignment:
Q  1 taggcattgtcgtagtaactgacttggctaggcaaacttgccccactttattaaggagattacctttccaagttgagagtcttctatgcatcttctctaa 100  Q
    |||||||||||||||||||| ||||||||||||||||  ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  26173076 taggcattgtcgtagtaactaacttggctaggcaaacccgccccgctttattaaggagattaccttttcaagttgagagtcttctatgcatcttctctaa 26172977  T
Q  101 aatataatcatatgtatctttgatagctcgaccttgtatcaaaggaaaatccaagtcgtgccccaaattggccacaaaacggatagaggagatttcttta 200  Q
    |||||||||||||||||||||| ||| ||||||||||||| |||||||| |||| | ||| ||||||||||||||||||||||||||| |||||||||||    
T  26172976 aatataatcatatgtatctttggtaggtcgaccttgtatcgaaggaaaacccaactagtg-cccaaattggccacaaaacggatagagaagatttcttta 26172878  T
Q  201 atactt 206  Q
    ||||||    
T  26172877 atactt 26172872  T

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Target: chr4 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 38262348 - 38262459
Alignment:
Q  1 taggcattgtcgtagtaactgacttggctaggcaaacttgccccactttattaaggagattacctttccaagttgagagtcttctatgcatcttctctaa 100  Q
    |||||||||||||||||||||| ||||||||||||||  |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  38262348 taggcattgtcgtagtaactgatttggctaggcaaacccgccccactttattaaggaaattacctttccaagttgagagtcttctatgcatcttctctaa 38262447  T
Q  101 aatataatcata 112  Q
    ||||||| ||||    
T  38262448 aatataaacata 38262459  T

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Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 49 - 206
Target Start/End: Original strand, 51608755 - 51608912
Alignment:
Q  49 tattaaggagattacctttccaagttgagagtcttctatgcatcttctctaaaatataatcatatgtatctttgatagctcgaccttgtatcaaaggaaa 148  Q
    ||||||||||||||| ||| |||||||| || ||| |||||| ||| | | ||||||||||||||||||||||  ||||||||||||| || ||||||||    
T  51608755 tattaaggagattacattttcaagttgatagccttttatgcaacttttatgaaatataatcatatgtatctttagtagctcgaccttgaataaaaggaaa 51608854  T
Q  149 atccaagtcgtgccccaaattggccacaaaacggatagaggagatttctttaatactt 206  Q
      ||  || || ||||||||||||||| || | |||| || |||||| ||||||||||    
T  51608855 gcccgtgtagttccccaaattggccacgaagcagataaagaagatttatttaatactt 51608912  T

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Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 73 - 198
Target Start/End: Original strand, 13882651 - 13882772
Alignment:
Q  73 ttgagagtcttctatgcatcttctctaaaatataatcatatgtatctttgatagctcgaccttgtatcaaaggaaaatccaagt-cgtgccccaaattgg 171  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||| ||||||     | ||||||||||||||||| |||||| | | |||||||||||    
T  13882651 ttgagagtcttctatgcatcttctataagatataatcatatgtatcattgata-----aacttgtatcaaaggaaaacccaagtacttcccccaaattgg 13882745  T
Q  172 ccacaaaacggatagaggagatttctt 198  Q
    |||| ||| ||||||||||||||||||    
T  13882746 ccacgaaatggatagaggagatttctt 13882772  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 96
Target Start/End: Original strand, 13882599 - 13882649
Alignment:
Q  46 ctttattaaggagattacctttccaagttgagagtcttctatgcatcttct 96  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  13882599 ctttattaaggagattacctttttaagttgagagtcttctatgcatcttct 13882649  T

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Target: scaffold0007 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 13 - 90
Target Start/End: Complemental strand, 242605 - 242528
Alignment:
Q  13 tagtaactgacttggctaggcaaacttgccccactttattaaggagattacctttccaagttgagagtcttctatgca 90  Q
    ||||||| || |||||||| |||||||||| |  |||||||||||||||||||||||||||||| |  ||||||||||    
T  242605 tagtaaccgatttggctagacaaacttgcctcgttttattaaggagattacctttccaagttgataaccttctatgca 242528  T

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