View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11581_low_44 (Length: 292)
Name: NF11581_low_44
Description: NF11581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11581_low_44 |
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Alignment Details
Target: chr2 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 18 - 290
Target Start/End: Original strand, 34668667 - 34668928
Alignment:
| Q |
18 |
aaaaacacaataacaaacaaatgtaagtctaagtcgtttgtgagataaaaattgtcccacttataaatacatgttcagatcatcttttatctaatatgaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||| |
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| T |
34668667 |
aaaaacacaataacaaacaaatgtaagtctaagttgtttgtgagataaaaattgtcacacttataaatacatgttcagatcatcatttatctgatatgaa |
34668766 |
T |
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| Q |
118 |
acttttaacacaatcattataaaactaactttataaaatgagagatatatcttgcacctaaattcattttcagactcatttaattttctattacatagac |
217 |
Q |
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||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
34668767 |
acttttaacacaatctttataaaactaactttataaaatgaaagatatatcttgcacctaaattcattttcagactcatttaattttctattatatagac |
34668866 |
T |
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| Q |
218 |
catctcatgtacttatgcattatatatattttcactaccnnnnnnntatctaaagta-tttttcaatctatgaa |
290 |
Q |
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||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||| |
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| T |
34668867 |
------------ttatgcattatatatattttcactaccaaaaaaatatataaagtattttttcaatctatgaa |
34668928 |
T |
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