View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11581_low_45 (Length: 288)

Name: NF11581_low_45
Description: NF11581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11581_low_45
NF11581_low_45
[»] chr3 (1 HSPs)
chr3 (1-278)||(9171924-9172194)
[»] chr1 (9 HSPs)
chr1 (1-227)||(9256982-9257191)
chr1 (2-251)||(9466177-9466419)
chr1 (2-226)||(9300516-9300736)
chr1 (10-266)||(9364827-9365076)
chr1 (10-178)||(9242056-9242217)
chr1 (10-266)||(9337968-9338214)
chr1 (1-74)||(8962725-8962798)
chr1 (201-266)||(9238409-9238474)
chr1 (2-212)||(8927376-8927579)
[»] scaffold0690 (1 HSPs)
scaffold0690 (10-72)||(2036-2095)
[»] chr6 (1 HSPs)
chr6 (10-72)||(15910011-15910070)


Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 9171924 - 9172194
Alignment:
Q  1 tcaagttctgtatccagattggatccacagtttgcttgaaggaggagaaatacaaatccctatagatgaagatgatgagggagattttagaattgcgnnn 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||      ||||||||||||||||||||||       
T  9171924 tcaagttctgtatccagattggatccacagtttgcttgaaggaggagaaatacaaatcccaatagatga------tgagggagattttagaattgcgaaa 9172017  T
Q  101 nnnnttggcaatcgtgggactttggtgcatccaatggcaacctatgcatcgttcgtctatgaaagctgtgatgcaaatgatgcaaagagatggagacaac 200  Q
        |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||||||     
T  9172018 aaa-ttggcaatcgtgggactttggtgcatccaatggcaacctatgcatcgtccgtctatgaaaactgtgatgcaaatgctgcaaggagatggagacaag 9172116  T
Q  201 ttaaaagttccctgcaacccttttggacctacaacttcatctaatacaactactaatattgttgcaccaccacctatg 278  Q
    ||| ||||||| |  ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9172117 ttacaagttccttcaaacccttatggacctacaacttcatctaatacaactactaatattgttgcaccaccacctatg 9172194  T

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Target: chr1 (Bit Score: 87; Significance: 1e-41; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 9257191 - 9256982
Alignment:
Q  1 tcaagttctgtatccagattggatccacagtttgcttgaaggaggagaaatacaaatccctatagatgaagatgatgagggagattttagaattgcgnnn 100  Q
    ||||||||| |||||||||||||||||| |||||||| |||||| ||||||||| ||| |||||||||||||      |||||||||||||||||||       
T  9257191 tcaagttctatatccagattggatccacggtttgcttaaaggagaagaaatacatatcgctatagatgaaga------gggagattttagaattgcgaaa 9257098  T
Q  101 nnnnttggcaatcgtgggactttggtgcatccaatggcaacctatgcatcgttcgtctatgaaagctgtgatgcaaatgatgcaaagagatggagacaac 200  Q
        ||||||||||||||||||||||||||||          |||||||| |  ||||||||||| ||||||||||||| || || ||||||||||||||    
T  9257097 aaa-ttggcaatcgtgggactttggtgcatcc----------tatgcatcatcggtctatgaaagatgtgatgcaaatgctgaaaggagatggagacaac 9257009  T
Q  201 ttaaaagttccctgcaacccttttgga 227  Q
    ||||||||| |||||||||||||||||    
T  9257008 ttaaaagtttcctgcaacccttttgga 9256982  T

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Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 2 - 251
Target Start/End: Complemental strand, 9466419 - 9466177
Alignment:
Q  2 caagttctgtatccagattggatccacagtttgcttgaaggaggagaaatacaaatccctatagatgaagatgatgagggagattttagaattgcgnnnn 101  Q
    |||||||| ||||||||||||||||||  |||||||||||| ||||| |||||||||||||| || |||||      ||||||||| || ||| |         
T  9466419 caagttctatatccagattggatccacgatttgcttgaagggggagacatacaaatccctattgacgaaga------gggagatttcaggattccaaaaa 9466326  T
Q  102 nnnttggcaatcgtgggactttggtgcatccaatggcaacctatgcatcgttcgtctatgaaagctgtgatgcaaatgatgcaaagagatggagacaact 201  Q
       | ||| || || |||||| |||||||||| |||||||||||||||||| | || |||||| ||||||| |||||| | ||| | ||||||||||| |    
T  9466325 aaat-ggcgattgttggacttcggtgcatccagtggcaacctatgcatcgtccatccatgaaaactgtgatacaaatgctacaaggtgatggagacaagt 9466227  T
Q  202 taaaagttccctgcaacccttttggacctacaacttcatctaatacaact 251  Q
    ||||||| ||| |||| |||||||| |||||||||||| ||||| |||||    
T  9466226 taaaagtccccagcaatccttttgggcctacaacttcaactaattcaact 9466177  T

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Target: chr1; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 2 - 226
Target Start/End: Original strand, 9300516 - 9300736
Alignment:
Q  2 caagttctgtatccagattggatccacagtttgcttgaaggaggagaaatacaaatccctatagatgaagatgatgagggagattttagaattgcgnnnn 101  Q
    |||||| | |||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||||   ||  |||  ||||| ||||||||         
T  9300516 caagttttatatccagattggatccacagtttagttgaaggaggagacatacaaatccctatagatgaa---gaacaggatgatttcagaattgc-aaaa 9300611  T
Q  102 nnnttggcaatcgtgggactttggtgcatccaatggcaacctatgcatcgttcgtctatgaaagctgtgatgcaaatgatgcaaagagatggagacaact 201  Q
        ||||||| |||||| | |||||||| || |||||||||||||||||| |||| |||||| ||||| |||||||| | ||| |||| ||||||||      
T  9300612 aaaatggcaattgtgggattatggtgcattcagtggcaacctatgcatcgtccgtccatgaaaactgtgttgcaaatgttacaaggagagggagacaagc 9300711  T
Q  202 taaaagttccctgcaacccttttgg 226  Q
    ||||||||||  |||| ||||||||    
T  9300712 taaaagttccacgcaatccttttgg 9300736  T

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Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 266
Target Start/End: Original strand, 9364827 - 9365076
Alignment:
Q  10 gtatccagattggatccacagtttgcttgaaggaggagaaatacaaatccctatagatgaagatgatgagggagattttagaattgcgnnnnnnnttggc 109  Q
    ||||||||| |||||||||| |||||||||||||||||| ||||| |||||||| ||||||      |||||||||||||||||| |        |||||    
T  9364827 gtatccagactggatccacaatttgcttgaaggaggagatatacatatccctattgatgaa------gagggagattttagaatt-ccaaaaaaattggc 9364919  T
Q  110 aatcgtgggactttggtgcatccaatggcaacctatgcatcgttcgtctatgaaagctgtgatgcaaatgatgcaaagagatggagacaacttaaaagtt 209  Q
    ||  |||||||| ||||| ||||||||||| ||| |||| ||| || | ||||||  |||||| |||||| | ||| |||| || ||||| ||||||||     
T  9364920 aactgtgggactatggtgtatccaatggcaccctttgcaccgtccgacaatgaaatatgtgatacaaatgcttcaaggagagggggacaagttaaaagtg 9365019  T
Q  210 ccctgcaacccttttggacctacaacttcatctaatacaactactaatattgttgca 266  Q
    ||    || || || ||||| |||||| || ||||||||| | ||||||||||||||    
T  9365020 cctactaatccgttcggaccaacaactacaactaatacaaatgctaatattgttgca 9365076  T

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Target: chr1; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 10 - 178
Target Start/End: Complemental strand, 9242217 - 9242056
Alignment:
Q  10 gtatccagattggatccacagtttgcttgaaggaggagaaatacaaatccctatagatgaagatgatgagggagattttagaattgcgnnnnnnnttggc 109  Q
    ||||||||| |||||||||| |||||||||||||||||| |||||||||||||| ||||||      |||||||||||||||||| |        |||||    
T  9242217 gtatccagactggatccacaatttgcttgaaggaggagatatacaaatccctattgatgaa------gagggagattttagaatt-ccaaaaaaattggc 9242125  T
Q  110 aatcgtgggactttggtgcatccaatggcaacctatgcatcgttcgtctatgaaagctgtgatgcaaat 178  Q
    ||  |||||||| ||||| ||||||||||| ||| |||||||| || | ||||||  |||||| |||||    
T  9242124 aactgtgggactatggtgtatccaatggcaccctttgcatcgtccggcaatgaaatttgtgatacaaat 9242056  T

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Target: chr1; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 10 - 266
Target Start/End: Original strand, 9337968 - 9338214
Alignment:
Q  10 gtatccagattggatccacagtttgcttgaaggaggagaaatacaaatccctatagatgaagatgatgagggagattttagaattgcgnnnnnnnttggc 109  Q
    ||||||||| |||||||||| ||||||||||||||   | |||||||||||||| |||||||| |      |||||||||||||| |        |||||    
T  9337968 gtatccagactggatccacaatttgcttgaaggag---agatacaaatccctattgatgaagacg------gagattttagaattcc-aaaaaaattggc 9338057  T
Q  110 aatcgtgggactttggtgcatccaatggcaacctatgcatcgttcgtctatgaaagctgtgatgcaaatgatgcaaagagatggagacaacttaaaagtt 209  Q
    ||  |||||||| ||||| ||||||||||| ||| |||||||| || | |||||| |||||||||||||| | ||| |||| || ||||| ||||||||     
T  9338058 aactgtgggactatggtgtatccaatggcaccctttgcatcgtccgacaatgaaatctgtgatgcaaatgctccaaggagagggggacaagttaaaagtg 9338157  T
Q  210 ccctgcaacccttttggacctacaacttcatctaatacaactactaatattgttgca 266  Q
    ||    || || |||||||| |||||| || |||||| || |  |||||||||||||    
T  9338158 cctactaatccgtttggaccaacaactacaactaataaaaatgttaatattgttgca 9338214  T

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Target: chr1; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 8962725 - 8962798
Alignment:
Q  1 tcaagttctgtatccagattggatccacagtttgcttgaaggaggagaaatacaaatccctatagatgaagatg 74  Q
    ||||||| |||||||||||||||||||| ||||| ||||||| ||||| ||||| |||||||| ||||||||||    
T  8962725 tcaagttttgtatccagattggatccacggtttgtttgaagggggagatatacatatccctattgatgaagatg 8962798  T

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Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 266
Target Start/End: Original strand, 9238409 - 9238474
Alignment:
Q  201 ttaaaagttccctgcaacccttttggacctacaacttcatctaatacaactactaatattgttgca 266  Q
    ||||||||||||| ||||||||||||| ||||| ||||| | |||| |||||||| || |||||||    
T  9238409 ttaaaagttccctccaacccttttggatctacagcttcagcaaataaaactactattaatgttgca 9238474  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 212
Target Start/End: Original strand, 8927376 - 8927579
Alignment:
Q  2 caagttctgtatccagattggatccacagtttgcttgaaggaggagaaatacaaatccctatagatgaagatgatgagggagattttagaattgcgnnnn 101  Q
    ||||||||||||||||||||||||||  |||| |||||||| |||||  || | ||||| || ||||||||      |||||||| |||||||||         
T  8927376 caagttctgtatccagattggatccatggtttacttgaaggtggagacgtatatatcccaattgatgaaga------gggagattgtagaattgcaaaaa 8927469  T
Q  102 nnnttggcaatcgtgggactttggtgcatccaatggcaacctatgcatcgttcgtctatgaaagctgtgatgcaaatgatgcaaagagatggagacaact 201  Q
       | | |||| || |||||||||||||| || |||||  |  |||||||  |||| |||||| ||||| |||| ||| | ||| |||| |||||||| |    
T  8927470 aactag-caattgtcggactttggtgcattcagtggcactccgtgcatcggccgtccatgaaaactgtggtgcagatgcttcaaggagagggagacaaat 8927568  T
Q  202 taaaagttccc 212  Q
    |||||||||||    
T  8927569 taaaagttccc 8927579  T

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Target: scaffold0690 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0690
Description:

Target: scaffold0690; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 72
Target Start/End: Original strand, 2036 - 2095
Alignment:
Q  10 gtatccagattggatccacagtttgcttgaaggaggagaaatacaaatccctatagatgaaga 72  Q
    ||||||||| |||||||||| |||| |||||||||   | |||||||||||||| ||||||||    
T  2036 gtatccagactggatccacaatttgtttgaaggag---atatacaaatccctattgatgaaga 2095  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 72
Target Start/End: Complemental strand, 15910070 - 15910011
Alignment:
Q  10 gtatccagattggatccacagtttgcttgaaggaggagaaatacaaatccctatagatgaaga 72  Q
    ||||||||| |||||||||| |||| |||||||||   | |||||||||||||| ||||||||    
T  15910070 gtatccagactggatccacaatttgtttgaaggag---atatacaaatccctattgatgaaga 15910011  T

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