View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11581_low_46 (Length: 268)
Name: NF11581_low_46
Description: NF11581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11581_low_46 |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 17 - 254
Target Start/End: Complemental strand, 44187043 - 44186815
Alignment:
| Q |
17 |
aaataataggtttgattttataaatttagtgaatgttaacacatcctctaactctttacggtgcaaaagatgagcaaatcaatatagttaatacatgaat |
116 |
Q |
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| T |
44187043 |
aaataataggtttgatttta---atttagtgaatgttaatacatcctct------ttacggtgcaaaagatgagcaaatcaataaagttaatacatgaat |
44186953 |
T |
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| Q |
117 |
gataaactggtggtaggtttaattttaatttagtgatatgttgcaataaattttcaaagcttcttccccactaaagtgttgataatcttcgtcaatctca |
216 |
Q |
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| T |
44186952 |
gataaactggtggtaggtttaattttaatttagtgatatgttgcaataaattttcaaagcttcttccccactaaagtgttgataatcttcgtcaatctca |
44186853 |
T |
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| Q |
217 |
ttttcatcatcatcatcaacttggcctgcatcttctcc |
254 |
Q |
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| T |
44186852 |
ttttcatcatcatcatcaacttggcctccatcttctcc |
44186815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 250
Target Start/End: Complemental strand, 45872409 - 45872330
Alignment:
| Q |
168 |
tttcaaagcttcttccccactaaagtgttgataatcttcgtcaatctcattttcatcatcatcatcaacttggcctgcatctt |
250 |
Q |
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| T |
45872409 |
tttccaagcttctttcttactaaagtgttggtaatcttcgtcaatcctattctcatcatc---atcaacttgacctgcatctt |
45872330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 223 - 254
Target Start/End: Complemental strand, 8015105 - 8015074
Alignment:
| Q |
223 |
tcatcatcatcaacttggcctgcatcttctcc |
254 |
Q |
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| T |
8015105 |
tcatcatcatcaacttggcctgcatcttctcc |
8015074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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