View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11581_low_47 (Length: 268)
Name: NF11581_low_47
Description: NF11581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11581_low_47 |
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| [»] scaffold0536 (3 HSPs) |
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Alignment Details
Target: scaffold0536 (Bit Score: 132; Significance: 1e-68; HSPs: 3)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 104 - 251
Target Start/End: Complemental strand, 10433 - 10286
Alignment:
| Q |
104 |
aggaacaactcatacaaattcgtaacccgatgcttctaccccgcactcaatctcataaagttgtttatctgaaaaataacataggcttccaaagcaaatg |
203 |
Q |
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| T |
10433 |
aggaacaactcatacaaattcgtaacccgatgcttctaccctgcacgcaatctcataaagttgtttatctgaaaaataacataggcttccaaagcaaatg |
10334 |
T |
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| Q |
204 |
tacaaaactgatatctcgcttcaagttgagccaactcagacactcatg |
251 |
Q |
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| T |
10333 |
tacaacactgatatctcgcttcaagttaagccaactcagacactcatg |
10286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 10536 - 10479
Alignment:
| Q |
1 |
taataatcaaacccttcttctttgcaataactctttcttcaaatcctttcggtagcca |
58 |
Q |
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| T |
10536 |
taataatcaaacccttcttctttgcaataactctttcttcaaatcctttcggtagcca |
10479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 104 - 251
Target Start/End: Complemental strand, 6451 - 6302
Alignment:
| Q |
104 |
aggaacaactcatacaaattcgtaacccgatgcttctaccccgcactcaatctcataaagttgtttatctgaaaaataacataggcttccaaagcaaatg |
203 |
Q |
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| T |
6451 |
aggaacaacccatatgaatttgtgacccgatgcttctatcccacatgcaatctcgtaaagttgtttatccgggaaaaggcataagcttccaaagcatatg |
6352 |
T |
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| Q |
204 |
tacaaaactga--tatctcgcttcaagttgagccaactcagacactcatg |
251 |
Q |
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| T |
6351 |
tacaacactgagttatctggcttcgagtctagccaactcagacactcatg |
6302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 104 - 245
Target Start/End: Original strand, 48958383 - 48958526
Alignment:
| Q |
104 |
aggaacaactcatacaaattcgtaacccgatgcttctaccccgcactcaatctcataaagttgtttatctgaaaaataacataggcttccaaagcaaatg |
203 |
Q |
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| T |
48958383 |
aggaacaacccatacaaattcgtgacctgatgcttctatcccacacgcaatctcataaagttgtttatcagataaataacatatgcttccaaagcatatg |
48958482 |
T |
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| Q |
204 |
tacaaaactga--tatctcgcttcaagttgagccaactcagaca |
245 |
Q |
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| T |
48958483 |
tacaacactgagttatgtctcttcaagttgagccaactcagaca |
48958526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 104 - 207
Target Start/End: Complemental strand, 48912285 - 48912182
Alignment:
| Q |
104 |
aggaacaactcatacaaattcgtaacccgatgcttctaccccgcactcaatctcataaagttgtttatctgaaaaataacataggcttccaaagcaaatg |
203 |
Q |
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||||||||| |||| ||||||| || ||||||||| | ||||||| |||||||||||||||||||||| ||||||| |||| ||||||||||||| ||| |
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| T |
48912285 |
aggaacaacccatatgaattcgtgactcgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacattggcttccaaagcatatg |
48912186 |
T |
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| Q |
204 |
taca |
207 |
Q |
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|||| |
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| T |
48912185 |
taca |
48912182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 142
Target Start/End: Original strand, 48961532 - 48961570
Alignment:
| Q |
104 |
aggaacaactcatacaaattcgtaacccgatgcttctac |
142 |
Q |
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| T |
48961532 |
aggaacaacccatacaaattcgtgacccgatgcttctac |
48961570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 105 - 248
Target Start/End: Complemental strand, 12590108 - 12589963
Alignment:
| Q |
105 |
ggaacaactcatacaaattcgtaacccgatgcttctaccccgcactcaatctcataaagttgtttatctgaaaaataacataggcttccaaagcaaatgt |
204 |
Q |
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|||| ||| ||||| ||||||| || |||||||||| || ||| |||||||||||||||||||||||| ||||| |||| ||| |||||||| |||| |
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| T |
12590108 |
ggaataacccatacgaattcgtggcctgatgcttctatgccacacgaaatctcataaagttgtttatctgagaaatagcatatgctcccaaagcatatgt |
12590009 |
T |
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| Q |
205 |
acaaaactga--tatctcgcttcaagttgagccaactcagacactc |
248 |
Q |
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| T |
12590008 |
acaacacagagttatctcgcttcgagtttagccaactcagacactc |
12589963 |
T |
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