View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11581_low_50 (Length: 253)
Name: NF11581_low_50
Description: NF11581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11581_low_50 |
 | |
|
| [»] scaffold0007 (1 HSPs) |
| | |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 6943685 - 6943930
Alignment:
| Q |
1 |
cattggaagccttgagacaaggctttcaattccacattggtgacggatcctcctcattcttgtatgataacttgatggggctaggagcgctttgtcactt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
6943685 |
cattggaagccttgagacaaggctttcaattccgcattggtgacggatccttctcattcttgtacgataactagatggggctaggagcgctttgtcactt |
6943784 |
T |
|
| Q |
101 |
ggttgattttttcaacatttcggatactcaattacaacttaaggatgttagttttattggattatgagattggaataaactgatgacaatagttccaaac |
200 |
Q |
| |
|
|||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6943785 |
ggttgattttgtcaacatttcagatactcatttacaacttaaggatgttagttttattggattatgagattggaataaactgatgacaatagttccaaac |
6943884 |
T |
|
| Q |
201 |
gaactcaacactactattgatcatttcccccttcctttggcctttg |
246 |
Q |
| |
|
||||||| ||| ||||||||||| ||||||| |||||||||||||| |
|
|
| T |
6943885 |
gaactcagcacgactattgatcagttcccccctcctttggcctttg |
6943930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 32455949 - 32455776
Alignment:
| Q |
1 |
cattggaagccttgagacaaggctttcaattccacattggtgacggatcctcctcattcttgtatgataacttgatggggctaggagcgctttgtcactt |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||| ||||||||||||| | ||||||| ||| |
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|
| T |
32455949 |
cattggaagctttgagacaaggctttcaattccgcatcagtgacggatcctcctcattctggtatgataactggatggggctaggaacactttgtccctt |
32455850 |
T |
|
| Q |
101 |
ggttgattttttcaacatttcggatactcaattacaacttaaggatgttagttttattggattatgagattgga |
174 |
Q |
| |
|
|||||||||| |||||||||||||||||||| | ||||||||| |||||||||||||||||| ||| ||||||| |
|
|
| T |
32455849 |
ggttgattttgtcaacatttcggatactcaacttcaacttaagaatgttagttttattggatcatgggattgga |
32455776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 45 - 210
Target Start/End: Complemental strand, 36126952 - 36126788
Alignment:
| Q |
45 |
ggatcctcctcattcttgtatgataacttgatggggctaggagcgctttgtcacttggttgattttttcaacatttcggatactcaattacaacttaagg |
144 |
Q |
| |
|
|||||||||||||||| |||| || | ||| | ||||| || | |||| |||||||||||||||| |||| |||| || ||| |||||| | ||||||| |
|
|
| T |
36126952 |
ggatcctcctcattctagtataattatctgacgaggctatgatcacttt-tcacttggttgattttgtcaatattttgggtacacaattatagcttaagg |
36126854 |
T |
|
| Q |
145 |
atgttagttttattggattatgagattggaataaactgatgacaatagttccaaacgaactcaaca |
210 |
Q |
| |
|
||||||||| ||||| | ||| |||| ||| ||| ||| |||||| |||||||| || ||||||| |
|
|
| T |
36126853 |
atgttagttaaattggctcatgggattagaaaaaattgacgacaatggttccaaaagagctcaaca |
36126788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 89 - 179
Target Start/End: Original strand, 21277742 - 21277832
Alignment:
| Q |
89 |
gctttgtcacttggttgattttttcaacatttcggatactcaattacaacttaaggatgttagttttattggattatgagattggaataaa |
179 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||| ||| | |||||||| |||||||| |||||||| |||| | | ||||||||||||| |
|
|
| T |
21277742 |
gctttgtcacttggttgattttatcaacacctcgaataattaattacaatttaaggatattagttttgttggctcgttagattggaataaa |
21277832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 161; Significance: 6e-86; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 1273112 - 1273352
Alignment:
| Q |
1 |
cattggaagccttgagacaaggctttcaattccacattggtgacggatcctcctcattcttgtatgataacttgatggggctaggagcgctttgtcactt |
100 |
Q |
| |
|
||||||||| |||||||||||| ||||||| || |||||||||||||||||||||||| | ||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
1273112 |
cattggaagtcttgagacaaggatttcaatgccgcattggtgacggatcctcctcattttggtatgataactagacggggctaggagcgctttgtcactt |
1273211 |
T |
|
| Q |
101 |
ggttgattttttcaacatttcggatactcaattacaacttaaggatgttagttttattggattatgagattggaataaactgatgacaatagttccaaac |
200 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
1273212 |
ggttgattttgtcaacattttggatactcaattacaacttacggatgttagttttattggatcatgggattggaataaactgatgacaatggttccaaac |
1273311 |
T |
|
| Q |
201 |
gaactcaacactactattgatcatttcccccttcctttggc |
241 |
Q |
| |
|
|| || ||||| ||||||||||| ||||| | ||||||||| |
|
|
| T |
1273312 |
gagctaaacacgactattgatcagttccctcctcctttggc |
1273352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 15579487 - 15579732
Alignment:
| Q |
1 |
cattggaagccttgagacaaggctttcaattccacattggtgacggatcctcctcattcttgtatgataacttgatggggctaggagcgctttgtcactt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||| || ||||||||||| |||||||||||| |
|
|
| T |
15579487 |
cattggaagccttgagacaaggctttcaattacgcattggtgacggatcctcctcattctggtatgataactagaaggggctaggagagctttgtcactt |
15579586 |
T |
|
| Q |
101 |
ggttgattttttcaacatttcggatactcaattacaacttaaggatgttagttttattggattatgagattggaataaactgatgacaatagttccaaac |
200 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||||||||||||||||||||| |||| ||||| ||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
15579587 |
ggttgattttgtcaacattttagatactcaattacaacttaaggatgttagctttaatggatcatgggattggaataaattgatgacaatagttccaaac |
15579686 |
T |
|
| Q |
201 |
gaactcaacactactattgatcatttcccccttcctttggcctttg |
246 |
Q |
| |
|
|| || | ||| ||| ||||||| |||| | |||| ||||||||| |
|
|
| T |
15579687 |
gagctaatcacgactgttgatcagttccttcctcctctggcctttg |
15579732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 34422075 - 34422199
Alignment:
| Q |
1 |
cattggaagccttgagacaaggctttcaattccacattggtgacggatcctcctcattcttgtatgataacttgatggggctaggagcgctttgtcactt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||| ||||||||||| || ||||||||||| |||||| |||| |
|
|
| T |
34422075 |
cattggaagccttgagacaaggctttcaatttcgcattggtgatggatcctcctcattctagtatgataactggaccgggctaggagcactttgttactt |
34422174 |
T |
|
| Q |
101 |
ggttgattttttcaacatttcggat |
125 |
Q |
| |
|
|||||||||| | ||||||| |||| |
|
|
| T |
34422175 |
ggttgattttgttaacattttggat |
34422199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 157 - 245
Target Start/End: Original strand, 34422194 - 34422281
Alignment:
| Q |
157 |
ttggattatgagattggaataaactgatgacaatagttccaaacgaactcaacactactattgatcatttcccccttcctttggccttt |
245 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| ||||||||||| |||| ||| ||||||||||| |||||| ||||||||||||| |
|
|
| T |
34422194 |
ttggatcatgagattggaataaactgatgacaatggttccaaacgagctcagcacgactattgatca-atcccccctcctttggccttt |
34422281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 119; Significance: 7e-61; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 35389879 - 35389681
Alignment:
| Q |
1 |
cattggaagccttgagacaaggctttcaattccacattggtgacggatcctcctcattcttgtatgataacttgatggggctaggagcgctttgtcactt |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||| |||||| |||||||||||||| ||||||||||| || |||||||||||| ||||||||||| |
|
|
| T |
35389879 |
cattggaagctttgagacaaggctttcaattttgcatcagtgacgtatcctcctcattctggtatgataactggacggggctaggagcactttgtcactt |
35389780 |
T |
|
| Q |
101 |
ggttgattttttcaacatttcggatactcaattacaacttaaggatgttagttttattggattatgagattggaataaactgatgacaatagttccaaa |
199 |
Q |
| |
|
|||||||||| || | |||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||| |||||||| |
|
|
| T |
35389779 |
ggttgattttgtccatatttcggatactcagttacaacttaaggatgttagttttattggatcatgggattggaataagttgatgacaatggttccaaa |
35389681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 4 - 246
Target Start/End: Complemental strand, 13882230 - 13881988
Alignment:
| Q |
4 |
tggaagccttgagacaaggctttcaattccacattggtgacggatcctcctcattcttgtatgataacttgatggggctaggagcgctttgtcacttggt |
103 |
Q |
| |
|
|||||| |||||||||| ||||||||||| ||| |||||| |||||| |||||| |||||||||| || ||||||| ||||| |||||||| ||||| | |
|
|
| T |
13882230 |
tggaagtcttgagacaatgctttcaattctgcatcggtgacagatccttctcatttttgtatgatagctggatggggttaggatcgctttgttacttgat |
13882131 |
T |
|
| Q |
104 |
tgattttttcaacatttcggatactcaattacaacttaaggatgttagttttattggattatgagattggaataaactgatgacaatagttccaaacgaa |
203 |
Q |
| |
|
||||||| ||||| |||||||||| ||||| | ||||||||||||||||||||| ||| ||| |||||||||||||| |||||||| ||| ||||||| |
|
|
| T |
13882130 |
tgattttgtcaacttttcggatacataattatagcttaaggatgttagttttattagatcatgggattggaataaactaatgacaatcgtttcaaacgag |
13882031 |
T |
|
| Q |
204 |
ctcaacactactattgatcatttcccccttcctttggcctttg |
246 |
Q |
| |
|
|||| || ||| ||||||| || |||| |||||||| |||| |
|
|
| T |
13882030 |
ctcatgacgactgttgatcaatttcccccacctttggcatttg |
13881988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 89; Significance: 5e-43; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 47 - 211
Target Start/End: Complemental strand, 51600468 - 51600304
Alignment:
| Q |
47 |
atcctcctcattcttgtatgataacttgatggggctaggagcgctttgtcacttggttgattttttcaacatttcggatactcaattacaacttaaggat |
146 |
Q |
| |
|
|||||||||||||| ||||||||| | ||||||||||| ||| ||| | ||||| ||||||||| |||||||||| ||||||||||| || |||||||| |
|
|
| T |
51600468 |
atcctcctcattctggtatgataattggatggggctagtagcacttcgccacttcgttgattttgtcaacatttcaaatactcaattaaaaattaaggat |
51600369 |
T |
|
| Q |
147 |
gttagttttattggattatgagattggaataaactgatgacaatagttccaaacgaactcaacac |
211 |
Q |
| |
|
||||| |||||||||| ||||| |||||||||||| |||||||| ||||||||||| |||||||| |
|
|
| T |
51600368 |
gttagctttattggatcatgagtttggaataaactaatgacaatggttccaaacgacctcaacac |
51600304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 38262011 - 38261887
Alignment:
| Q |
1 |
cattggaagccttgagacaaggctttcaattccacattggtgacggatcctcctcattcttgtatgataacttgatggggctaggagcgctttgtcactt |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||| |||||||||| ||||| ||||| || |||||||| || |||||||||||||||||||||| | |
|
|
| T |
38262011 |
cattggaagccttgagacaaggctttcgattccgcatcggtgacggatgctcctaattctagtttgataactagacggggctaggagcgctttgtcacat |
38261912 |
T |
|
| Q |
101 |
ggttgattttttcaacatttcggat |
125 |
Q |
| |
|
||||||||| |||||||||||||| |
|
|
| T |
38261911 |
ggttgatttagtcaacatttcggat |
38261887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 164 - 211
Target Start/End: Complemental strand, 38261865 - 38261818
Alignment:
| Q |
164 |
atgagattggaataaactgatgacaatagttccaaacgaactcaacac |
211 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
38261865 |
atgagattggaataaactgatgacaatggttccaaacaaactcaacac |
38261818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 62 - 211
Target Start/End: Original strand, 242923 - 243076
Alignment:
| Q |
62 |
gtatgataacttgatggggctaggagcgctttgtcact----tggttgattttttcaacatttcggatactcaattacaacttaaggatgttagttttat |
157 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| ||| ||||||||||| |||||||||| |||||||||||||| |||||| |||||| ||| || |
|
|
| T |
242923 |
gtatgataactggatggggctaggagcgctttgttactagcttggttgattttgtcaacatttcagatactcaattacagcttaagaatgttactttaat |
243022 |
T |
|
| Q |
158 |
tggattatgagattggaataaactgatgacaatagttccaaacgaactcaacac |
211 |
Q |
| |
|
||||| ||| ||||| |||||||| || ||||| ||| ||||||| |||||||| |
|
|
| T |
243023 |
tggatcatgggattgaaataaactaataacaatggtttcaaacgagctcaacac |
243076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 156
Target Start/End: Complemental strand, 33374219 - 33374109
Alignment:
| Q |
48 |
tcctcctcattcttgtat--gataacttgatggggctaggagcgctttgtcacttggttgattttttcaacatttcggatactcaattacaacttaagga |
145 |
Q |
| |
|
|||||||||||||||||| || || |||| || ||| |||| ||||||||||||||||||| |||| ||||| |||| ||||||||| ||||| | |
|
|
| T |
33374219 |
tcctcctcattcttgtatatgacaatcggatgtggttagaagcgttttgtcacttggttgatttcgtcaatatttcagatattcaattacagtttaagaa |
33374120 |
T |
|
| Q |
146 |
tgttagtttta |
156 |
Q |
| |
|
||||||||||| |
|
|
| T |
33374119 |
tgttagtttta |
33374109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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