View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11581_low_54 (Length: 243)
Name: NF11581_low_54
Description: NF11581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11581_low_54 |
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Alignment Details
Target: chr1 (Bit Score: 162; Significance: 1e-86; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 63 - 224
Target Start/End: Original strand, 4195125 - 4195286
Alignment:
| Q |
63 |
tacacaatggtaacacaaactgaaccgttgctaaaaccaacctacatttcattgcaagaacttcaaaaacacaacactcgcggcgatgcatggatctcca |
162 |
Q |
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| T |
4195125 |
tacacaatggtaacacaaactgaaccgttgctaaaaccaacctacatttcattgcaagaacttcaaaaacacaacactcgcggcgatgcatggatctcca |
4195224 |
T |
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| Q |
163 |
ttgacggcaagatctacgacgtttcaaaatgggccaaccaccatcccggcggcgagcttcct |
224 |
Q |
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| T |
4195225 |
ttgacggcaagatctacgacgtttcaaaatgggccaaccaccatcccggcggcgagcttcct |
4195286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 4186190 - 4186247
Alignment:
| Q |
160 |
ccattgacggcaagatctacgacgtttcaaaatgggccaaccaccatcccggcggcga |
217 |
Q |
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| T |
4186190 |
ccattgacggcaagatatacgacgtctctaaatgggccaaccaccatcccggtggcga |
4186247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 95 - 138
Target Start/End: Original strand, 4186137 - 4186180
Alignment:
| Q |
95 |
aaaaccaacctacatttcattgcaagaacttcaaaaacacaaca |
138 |
Q |
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| T |
4186137 |
aaaaccaacctacatttcactgcaagaactccaaaaacacaaca |
4186180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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