View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11581_low_55 (Length: 242)
Name: NF11581_low_55
Description: NF11581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11581_low_55 |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 11183477 - 11183696
Alignment:
| Q |
1 |
tattaacaaagttacagtgtgttctaacttcaccttgagttccagttaacactccaatattacccatcttaatcatcgaggccttaaaagcttcaaagaa |
100 |
Q |
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| T |
11183477 |
tattaacaaagttacagtgtgttctaacttcaccttgagttccagttaacactccaatattacccatcttaatcatggaggccttaaaagcttcaaagaa |
11183576 |
T |
|
| Q |
101 |
aagagtttgattgctgctaaagctattgacaatggcaatggtatcagcaccagttgtggaaaacaattcttggtcactctgaaacaagcccttttgaatc |
200 |
Q |
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| T |
11183577 |
aagagtttgattgctgctaaagctattaacaatggcaatggtatcagcaccaggtgtggaaaacaattcttggtcactctgaaacaaccccttttgaatc |
11183676 |
T |
|
| Q |
201 |
cttaggtttgagtagtagct |
220 |
Q |
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|||||||||||||||||||| |
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| T |
11183677 |
cttaggtttgagtagtagct |
11183696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 11190701 - 11190887
Alignment:
| Q |
1 |
tattaacaaagttacagtgtgttctaacttcaccttgagttccagttaacactccaatattacccatcttaatcatcgaggccttaaaagcttcaaagaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
11190701 |
tattaacaaagttacagtgtgttctaacttcaccttgagttccagttaacactccaatattacccatcttaatcatggaggccttaaaagcttcaaagaa |
11190800 |
T |
|
| Q |
101 |
aagagtttgattgctgctaaagctattgacaatggcaatggtatcagcaccagttgtggaaaacaattcttggtcactctgaaacaa |
187 |
Q |
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| T |
11190801 |
aagagtttgattgctgctaaagctattaacaatggcaatggtatcagcaccaggtgtggaaaaaagctcttgatcactctgaaacaa |
11190887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 2 - 218
Target Start/End: Complemental strand, 11173081 - 11172865
Alignment:
| Q |
2 |
attaacaaagttacagtgtgttctaacttcaccttgagttccagttaacactccaatattacccatcttaatcatcgaggccttaaaagcttcaaagaaa |
101 |
Q |
| |
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||||||||||||||| ||| |||||| ||||||||||| ||||||||||||| ||| ||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
11173081 |
attaacaaagttacattgttttctaatttcaccttgagatccagttaacactttaattctactcattttaatcatcgaggccttaaaagcttcaaagaaa |
11172982 |
T |
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| Q |
102 |
agagtttgattgctgctaaagctattgacaatggcaatggtatcagcaccagttgtggaaaacaattcttggtcactctgaaacaagcccttttgaatcc |
201 |
Q |
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| T |
11172981 |
agagtttggttgttgttgaaactgttgacaatggcaatcgtgtccgcgccacttgtggaagacaatacttggtcactctgaaacaagcctttttgaatcc |
11172882 |
T |
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| Q |
202 |
ttaggtttgagtagtag |
218 |
Q |
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||||||||||||||||| |
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| T |
11172881 |
ttaggtttgagtagtag |
11172865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 12 - 190
Target Start/End: Complemental strand, 11179173 - 11178995
Alignment:
| Q |
12 |
ttacagtgtgttctaacttcaccttgagttccagttaacactccaatattacccatcttaatcatcgaggccttaaaagcttcaaagaaaagagtttgat |
111 |
Q |
| |
|
||||| |||||||||| ||||||||||| ||||||||| ||||||||||||||||| || ||||| || || |||| ||||||||| |||||||||| |
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| T |
11179173 |
ttacattgtgttctaatttcaccttgagatccagttaaaactccaatattacccatttttatcattgaagcaacaaaattttcaaagaagagagtttgat |
11179074 |
T |
|
| Q |
112 |
tgctgctaaagctattgacaatggcaatggtatcagcaccagttgtggaaaacaattcttggtcactctgaaacaagcc |
190 |
Q |
| |
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| || || ||||||||||| | ||| || |||| |||| |||||||||| | ||||||||||| ||||||||||| |
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| T |
11179073 |
tattggcgaaactattgacaatagaaatagtgtcagaaccatttgtggaaaaaagctcttggtcactttgaaacaagcc |
11178995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 145
Target Start/End: Complemental strand, 11098016 - 11097927
Alignment:
| Q |
56 |
aatattacccatcttaatcatcgaggccttaaaagcttcaaagaaaagagtttgattgctgctaaagctattgacaatggcaatggtatc |
145 |
Q |
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||||||| |||| |||||||| || || ||||| |||||||| |||| ||| ||||| ||||||||||| ||||| ||||||||||| |
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| T |
11098016 |
aatattagccattttaatcatggacaccctaaaattctcaaagaagagagcttggttgctactaaagctattaacaatagcaatggtatc |
11097927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 195
Target Start/End: Complemental strand, 11119237 - 11119168
Alignment:
| Q |
126 |
ttgacaatggcaatggtatcagcaccagttgtggaaaacaattcttggtcactctgaaacaagccctttt |
195 |
Q |
| |
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||||||||| ||||||||| ||||| | ||| || ||||||||||||||||| |||| ||| ||||||| |
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| T |
11119237 |
ttgacaatgctaatggtatctgcacccggtgttgagaacaattcttggtcactttgaagcaaaccctttt |
11119168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 195
Target Start/End: Complemental strand, 11137776 - 11137707
Alignment:
| Q |
126 |
ttgacaatggcaatggtatcagcaccagttgtggaaaacaattcttggtcactctgaaacaagccctttt |
195 |
Q |
| |
|
||||||||| ||||||||||||||||| ||| || || | |||||||||||||||| ||| ||||||| |
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| T |
11137776 |
ttgacaatgctaatggtatcagcaccagatgtcgagaaaagctcttggtcactctgaagcaaaccctttt |
11137707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 195
Target Start/End: Complemental strand, 11111473 - 11111397
Alignment:
| Q |
119 |
aaagctattgacaatggcaatggtatcagcaccagttgtggaaaacaattcttggtcactctgaaacaagccctttt |
195 |
Q |
| |
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|||||| ||||||||| ||||||||| ||||| | ||| || || |||||||||||||| |||| ||| ||||||| |
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| T |
11111473 |
aaagctgttgacaatgctaatggtatctgcacccggtgttgagaataattcttggtcactttgaagcaaaccctttt |
11111397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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