View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11581_low_58 (Length: 239)
Name: NF11581_low_58
Description: NF11581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11581_low_58 |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 12 - 223
Target Start/End: Complemental strand, 5396352 - 5396141
Alignment:
| Q |
12 |
agagagcacaacaaatttatagaaaaccaaaaatgtcttaaactataaagtacagcaagaacatgttagatatttgactaaacaacctttttgttggctt |
111 |
Q |
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| T |
5396352 |
agagagcacaacacatttatagaaaaccaaaaatgtcttaaactataaagtacagcaagaacatgttagatatttgactaaacaacctttttgttggctt |
5396253 |
T |
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| Q |
112 |
acgtgtatatttatttttggatacatgacgtgggaacctaacttgtagataaaacttcatcatatttaggatatactcgtacaattatcaatcaatctaa |
211 |
Q |
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| T |
5396252 |
acgtgtatatttatttttggatacatgacgtgggaacctaacttgtagataaaacttcatcatatttaggatatactcgtacagttatcaatcaatctaa |
5396153 |
T |
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| Q |
212 |
acaagttcaaac |
223 |
Q |
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|||||||||||| |
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| T |
5396152 |
acaagttcaaac |
5396141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 186
Target Start/End: Original strand, 5408413 - 5408480
Alignment:
| Q |
119 |
tatttatttttggatacatgacgtgggaacctaacttgtagataaaacttcatcatatttaggatata |
186 |
Q |
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| T |
5408413 |
tatttatttttggatacatgacgtgggaacagaacttttagataaattttcatcttatgttggatata |
5408480 |
T |
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