View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11581_low_6 (Length: 712)
Name: NF11581_low_6
Description: NF11581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11581_low_6 |
 | |
|
| [»] scaffold1270 (1 HSPs) |
| | |
|
| [»] scaffold0014 (2 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 336; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 364
Target Start/End: Complemental strand, 35293909 - 35293546
Alignment:
| Q |
1 |
atgccattggcttgagacatatttgccttgaccagtaagtcatgtatatatttggtttgagataggtgcagggagccagtgtcagaatggtgcacctcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35293909 |
atgccattggcttgagacatattttccttgaccagtaagtcatgtatatatttggtttgagataggtgcagggagccagtgtcagaatggtgcacctcaa |
35293810 |
T |
|
| Q |
101 |
tccctaagaaataatcaagttgacccaaatctttgagagagaactctgaatttagcttctgaccaagttgctgaagcagggatttagagctgccattgat |
200 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
35293809 |
tccctaagaaatagtcaagttgacccaaatctttgagagagaactctgaatttagcttctgaacaagttgctgaagcggggatttagagctgccagtgat |
35293710 |
T |
|
| Q |
201 |
gataatatcatccacataaactaaaatgaaggtgctatgatgattggcatgtaaagtgaataaaatgggtcacatttgctggcacagaaaccaaacttga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
35293709 |
gataatatcatccacataaactaaaatgaaggtgctatgatgattggcatgtaaagtgaataaaatggatcacatttgctggcacagaaaccaaacttga |
35293610 |
T |
|
| Q |
301 |
gaagagtagatttcaatctctcaaaccatgccctgggaacttgctttaacccatatagggcctt |
364 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
35293609 |
gaagagtagatttcaatctctcaaaccatgccctgggagcttgctttaacccatatagggcctt |
35293546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 287; E-Value: 1e-160
Query Start/End: Original strand, 392 - 694
Target Start/End: Complemental strand, 35293543 - 35293241
Alignment:
| Q |
392 |
aatcagttgcttcaaaaccagggggttgagtcatgtacacctcttcctccaaataaccatttaaaaaggcattattgacatcaagttgttgaatacacca |
491 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35293543 |
aatcagttgcttcaaaaccagggggttgagtcatgtacgcctcttcctccaaataaccatttaaaaaggcattattgacatcaagttgttgaatacacca |
35293444 |
T |
|
| Q |
492 |
cttgtttgtcactgctaaagtcaatacagtcatgacagttactggtttgacagctggtgaaaaggttgccttgtagtcaaagcctggcatttggtggaac |
591 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35293443 |
cttgtttgtcactgctaaagtcaatacagtcatgacagttactggtttgacaactggtgaaaaggttgccttgtagtcaaagcctggcatttggtggaac |
35293344 |
T |
|
| Q |
592 |
ccctttgccaccagccttgctttgtatttgtttatgctcccatcagggttctgcttcactctgaactcccacttgcaacccacaaccttcctgttgtggg |
691 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
35293343 |
ccctttgccaccagccttgctttgtatttgtttatgctcccatcagggttctgcttcactctgaacatccacttgcaacccacaaccttcctgttgtggg |
35293244 |
T |
|
| Q |
692 |
gaa |
694 |
Q |
| |
|
||| |
|
|
| T |
35293243 |
gaa |
35293241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 15 - 694
Target Start/End: Original strand, 26349147 - 26349823
Alignment:
| Q |
15 |
agacatatttgccttgaccagtaagtcatgtatatatttggtttgagataggtgcagggagccagtgtcagaatggtgcacctcaatccctaagaaataa |
114 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||| || | |||||| | | | || ||||||||||||| ||||||||||||||| |||||||| || |
|
|
| T |
26349147 |
agacatatttgccttaacaagtaagtcatgtatatacttagcttgagacaagagaagagagccagtgtcagtatggtgcacctcaattcctaagaagtag |
26349246 |
T |
|
| Q |
115 |
tcaagttgacccaaatctttgagagagaactctgaatttagcttctgaccaagttgctgaagcagggatttagagctgccattgatgataatatcatcca |
214 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |||| ||| ||| | ||||| |||| | ||||||||||| || |||||||||||||||||| |
|
|
| T |
26349247 |
tcaagttgacccaaatccttgagagagaactctgagtttaacttttgaaccagttgttgaattaatgatttagagcttcctgtgatgataatatcatcca |
26349346 |
T |
|
| Q |
215 |
cataaactaaaatgaaggtgctatgatgattggcatgtaaagtgaataaaatggg-tcacatttgctggcacagaaaccaaacttgagaagagtagattt |
313 |
Q |
| |
|
|||| |||||||| ||||| || ||||||| |||||||||||||| ||| |||||||| || ||||| || || ||||| |||||||| || | |
|
|
| T |
26349347 |
catagactaaaataaaggtactgtgatgatctttatgtaaagtgaatagggagggatcacatttactagcacaaaaccccaacttcagaagagtggaagt |
26349446 |
T |
|
| Q |
314 |
caatctctcaaaccatgccctgggaacttgctttaacccatatagggccttccttgtttagcttacaaaccaaagaagaatcagttgcttcaaaaccagg |
413 |
Q |
| |
|
||||| ||||||||||||||| || ||||||| | |||||||||||| || ||||||||||||||||| ||| ||||||||| ||||||||||||| |
|
|
| T |
26349447 |
taatctttcaaaccatgccctgagagcttgcttgagcccatatagggcttt----gtttagcttacaaaccatagaggaatcagttacttcaaaaccagg |
26349542 |
T |
|
| Q |
414 |
gggttgagtcatgtacacctcttcctccaaataaccatttaaaaaggcattattgacatcaagttgttgaatacaccacttgtttgtcactgctaaagtc |
513 |
Q |
| |
|
|||||| ||||||| || ||||| || | | ||||||| |||||||| || ||||||||||||||||||||| |||||||| |||||| |||| ||| |
|
|
| T |
26349543 |
gggttgcatcatgtaaacttcttcttctagacaaccattcaaaaaggcgttgttgacatcaagttgttgaatatgccacttgtgtgtcacagctagtgtc |
26349642 |
T |
|
| Q |
514 |
aatacagtcatgacagttactggtttgacagctggtgaaaaggttgccttgtagtcaaagcctggcatttggtggaacccctttgccaccagccttgctt |
613 |
Q |
| |
|
|| || || | ||||| |||||||||||| ||||||| ||||| ||||||| ||||| || ||||||||||| ||||| || ||||||| ||||||| |
|
|
| T |
26349643 |
aaaactgttctaacagtcactggtttgacaactggtgagaaggtctccttgtaatcaaacccaggcatttggtgaaaccctttggccaccaatcttgctt |
26349742 |
T |
|
| Q |
614 |
tgtatttgtttatgctcccatcagggttctgcttcactctgaactcccacttgcaacccacaaccttcctgttgtggggaa |
694 |
Q |
| |
|
| ||||| |||||||| |||||||||||||| |||||||| || |||| || || |||||| ||||||| ||||| |||| |
|
|
| T |
26349743 |
tatatttatttatgcttccatcagggttctgtttcactctaaaaacccatttacatcccacagccttcctattgtgaggaa |
26349823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 309 - 364
Target Start/End: Complemental strand, 44201400 - 44201345
Alignment:
| Q |
309 |
gatttcaatctctcaaaccatgccctgggaacttgctttaacccatatagggcctt |
364 |
Q |
| |
|
||||||||||||||||||||||| |||||| | || ||||||||||| || ||||| |
|
|
| T |
44201400 |
gatttcaatctctcaaaccatgctctgggagcctgttttaacccatagagagcctt |
44201345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 447 - 496
Target Start/End: Original strand, 32457891 - 32457940
Alignment:
| Q |
447 |
accatttaaaaaggcattattgacatcaagttgttgaatacaccacttgt |
496 |
Q |
| |
|
||||||||| ||||||||||||||||| || ||||||||| |||||||| |
|
|
| T |
32457891 |
accatttaagaaggcattattgacatccagctgttgaataggccacttgt |
32457940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 99; Significance: 2e-48; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 91 - 641
Target Start/End: Original strand, 34526277 - 34526824
Alignment:
| Q |
91 |
tgcacctcaatccctaagaaataatcaagttgacccaaatctttgagagagaactctgaatttagcttctgaccaagttgctgaagcagggatttagagc |
190 |
Q |
| |
|
||||||||||| |||||||| |||||||| | || | ||| || |||||||| |||| ||||| ||| | | |||||||||||| | ||| ||||| |
|
|
| T |
34526277 |
tgcacctcaattcctaagaagtaatcaagcttgcctagatcctttagagagaattctgcatttaactttttaacaagttgctgaattaaggaggcagagc |
34526376 |
T |
|
| Q |
191 |
tgccattgatgataatatcatccacataaactaaaatgaaggtgctatgatgattggcatgtaaagtgaataaa-atgggtcacatttgctggcacagaa |
289 |
Q |
| |
|
|||| |||||| |||||||| |||||||||| ||||||||||| || ||||| |||||||| | || | | |||| |||||||| || | ||||| |
|
|
| T |
34526377 |
tgcctgtgatgagtatatcatcaacataaactagcatgaaggtgctgtgctgatttgcatgtaagataaacagagatggatcacatttactagagcagaa |
34526476 |
T |
|
| Q |
290 |
accaaacttgagaagagtagatttcaatctctcaaaccatgccctgggaacttgctttaacccatatagggccttccttgtttagcttacaaaccaaaga |
389 |
Q |
| |
|
||| | ||| || ||||| ||||| || || |||||||| || || || | || ||||||||||||| ||| || || || ||||| |||||||| |
|
|
| T |
34526477 |
acccagcttaagcagagtggattttaacctttcaaaccaggctcttggggcctgttttaacccatataaggcttta----ttcagtttacacaccaaaga |
34526572 |
T |
|
| Q |
390 |
agaatcagttgcttcaaaaccagggggttgagtcatgtacacctcttcctccaaataaccatttaaaaaggcattattgacatcaagttgttgaatacac |
489 |
Q |
| |
|
| |||| |||||||||||||| ||||| ||||||||||| |||||||| ||||| ||||||||||||||||| || ||||| ||||||||||| ||| |
|
|
| T |
34526573 |
gggatcaacagcttcaaaaccaggaggttgtgtcatgtacacttcttcctctaaatagccatttaaaaaggcattgtttacatccagttgttgaatgcac |
34526672 |
T |
|
| Q |
490 |
cacttgtttgtcactgctaaagtcaatacagtcatgacagttactggtttgacagctggtgaaaaggttgccttgtagtcaaagcctggcatttggtgga |
589 |
Q |
| |
|
||||||||||| ||||||| |||| ||| | | ||||||||||| || || |||| ||||| ||| | || ||||||||||| |||||||| || | |
|
|
| T |
34526673 |
cacttgtttgtgactgctagtgtcagcacacttctcacagttactggctttaccactggagaaaatgtttctttatagtcaaagccaggcatttgatgaa |
34526772 |
T |
|
| Q |
590 |
acccctttgccaccagccttgctttgtatttgtttatgctcccatcagggtt |
641 |
Q |
| |
|
|||| || || |||| ||||| ||||| || || ||||| ||||||||||| |
|
|
| T |
34526773 |
accctttggcaaccaatcttgccttgtacttattgatgcttccatcagggtt |
34526824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 91 - 641
Target Start/End: Original strand, 45571351 - 45571898
Alignment:
| Q |
91 |
tgcacctcaatccctaagaaataatcaagttgacccaaatctttgagagagaactctgaatttagcttctgaccaagttgctgaagcagggatttagagc |
190 |
Q |
| |
|
||||||||||| |||||||| |||||||| | || | ||| || |||||||| |||| ||||| ||| | | |||||||||||| | ||| ||||| |
|
|
| T |
45571351 |
tgcacctcaattcctaagaagtaatcaagcttgcctagatcctttagagagaattctgcatttaactttttaacaagttgctgaattaaggaggcagagc |
45571450 |
T |
|
| Q |
191 |
tgccattgatgataatatcatccacataaactaaaatgaaggtgctatgatgattggcatgtaaagtgaataaa-atgggtcacatttgctggcacagaa |
289 |
Q |
| |
|
|||| |||||| |||||||| |||||||||| ||||||||||| || ||||| |||||||| | || | | |||| |||||||| || | ||||| |
|
|
| T |
45571451 |
tgcctgtgatgagtatatcatcaacataaactagcatgaaggtgctgtgctgatttgcatgtaagataaacagagatggatcacatttactagagcagaa |
45571550 |
T |
|
| Q |
290 |
accaaacttgagaagagtagatttcaatctctcaaaccatgccctgggaacttgctttaacccatatagggccttccttgtttagcttacaaaccaaaga |
389 |
Q |
| |
|
||| | ||| || ||||| ||||| || || |||||||| || || || | || ||||||||||||| ||| || || || ||||| |||||||| |
|
|
| T |
45571551 |
acccagcttaagcagagtggattttaacctttcaaaccaggctcttggggcctgttttaacccatataaggcttta----ttcagtttacacaccaaaga |
45571646 |
T |
|
| Q |
390 |
agaatcagttgcttcaaaaccagggggttgagtcatgtacacctcttcctccaaataaccatttaaaaaggcattattgacatcaagttgttgaatacac |
489 |
Q |
| |
|
| |||| |||||||||||||| ||||| ||||||||||| |||||||| ||||| ||||||||||||||||| || ||||| ||||||||||| ||| |
|
|
| T |
45571647 |
gggatcaacagcttcaaaaccaggaggttgtgtcatgtacacttcttcctctaaatagccatttaaaaaggcattgtttacatccagttgttgaatgcac |
45571746 |
T |
|
| Q |
490 |
cacttgtttgtcactgctaaagtcaatacagtcatgacagttactggtttgacagctggtgaaaaggttgccttgtagtcaaagcctggcatttggtgga |
589 |
Q |
| |
|
||||||||||| ||||||| |||| ||| | | ||||||||||| || || |||| ||||| ||| | || ||||||||||| |||||||| || | |
|
|
| T |
45571747 |
cacttgtttgtgactgctagtgtcagcacacttctcacagttactggctttaccactggagaaaatgtttctttatagtcaaagccaggcatttgatgaa |
45571846 |
T |
|
| Q |
590 |
acccctttgccaccagccttgctttgtatttgtttatgctcccatcagggtt |
641 |
Q |
| |
|
|||| || || |||| ||||| ||||| || || ||||| ||||||||||| |
|
|
| T |
45571847 |
accctttggcaaccaatcttgccttgtacttattgatgcttccatcagggtt |
45571898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 400 - 641
Target Start/End: Complemental strand, 17993608 - 17993367
Alignment:
| Q |
400 |
gcttcaaaaccagggggttgagtcatgtacacctcttcctccaaataaccatttaaaaaggcattattgacatcaagttgttgaatacaccacttgtttg |
499 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||| |||||||| ||||| ||||||||||||||||| || ||||| ||||||||||| ||||||||||||| |
|
|
| T |
17993608 |
gcttcaaaaccaggaggttgtgtcatgtacacttcttcctctaaatagccatttaaaaaggcattgtttacatccagttgttgaatgcaccacttgtttg |
17993509 |
T |
|
| Q |
500 |
tcactgctaaagtcaatacagtcatgacagttactggtttgacagctggtgaaaaggttgccttgtagtcaaagcctggcatttggtggaacccctttgc |
599 |
Q |
| |
|
| ||||||| |||| ||| | | ||||||||||| || || |||| ||||| ||| | || ||||||||||| |||||||| || ||||| || || |
|
|
| T |
17993508 |
tgactgctagtgtcagcacacttctcacagttactggctttaccactggagaaaatgtttctttatagtcaaagccaggcatttgatgaaaccctttggc |
17993409 |
T |
|
| Q |
600 |
caccagccttgctttgtatttgtttatgctcccatcagggtt |
641 |
Q |
| |
|
|||| ||||| ||||| || |||| ||| ||||||||||| |
|
|
| T |
17993408 |
aaccaatcttgccttgtacttatttacgcttccatcagggtt |
17993367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 254
Target Start/End: Complemental strand, 17993914 - 17993751
Alignment:
| Q |
91 |
tgcacctcaatccctaagaaataatcaagttgacccaaatctttgagagagaactctgaatttagcttctgaccaagttgctgaagcagggatttagagc |
190 |
Q |
| |
|
||||||||||| |||||||| |||||||| || || | ||| || |||||||| |||| ||||| ||| | | | |||||||||| | ||| ||||| |
|
|
| T |
17993914 |
tgcacctcaattcctaagaagtaatcaagctggcctagatcctttagagagaattctgcatttaactttttaaccagttgctgaattaaggaggcagagc |
17993815 |
T |
|
| Q |
191 |
tgccattgatgataatatcatccacataaactaaaatgaaggtgctatgatgattggcatgtaa |
254 |
Q |
| |
|
|||| |||||| |||||||| |||||||| | |||||||| || || ||||| |||||||| |
|
|
| T |
17993814 |
tgcctgtgatgagtatatcatcaacataaacgagcatgaaggtactgtgctgatttgcatgtaa |
17993751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 309 - 364
Target Start/End: Original strand, 48510216 - 48510271
Alignment:
| Q |
309 |
gatttcaatctctcaaaccatgccctgggaacttgctttaacccatatagggcctt |
364 |
Q |
| |
|
||||||||||||||||||||||| |||||| | || ||||||||||| || ||||| |
|
|
| T |
48510216 |
gatttcaatctctcaaaccatgctctgggagcctgttttaacccatagagagcctt |
48510271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 309 - 364
Target Start/End: Original strand, 48724658 - 48724713
Alignment:
| Q |
309 |
gatttcaatctctcaaaccatgccctgggaacttgctttaacccatatagggcctt |
364 |
Q |
| |
|
||||||||||||||||||||||| |||||| | || ||||||||||| || ||||| |
|
|
| T |
48724658 |
gatttcaatctctcaaaccatgctctgggagcctgttttaacccatagagagcctt |
48724713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 95; Significance: 4e-46; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 91 - 641
Target Start/End: Original strand, 35025483 - 35026030
Alignment:
| Q |
91 |
tgcacctcaatccctaagaaataatcaagttgacccaaatctttgagagagaactctgaatttagcttctgaccaagttgctgaagcagggatttagagc |
190 |
Q |
| |
|
||||||||||| |||||||| |||||||| | || | ||| || |||||||| |||| ||||| ||| | | |||||||||||| | ||| ||||| |
|
|
| T |
35025483 |
tgcacctcaattcctaagaagtaatcaagcttgcctagatcctttagagagaattctgcatttaactttttaacaagttgctgaattaaggaggcagagc |
35025582 |
T |
|
| Q |
191 |
tgccattgatgataatatcatccacataaactaaaatgaaggtgctatgatgattggcatgtaaagtgaataaa-atgggtcacatttgctggcacagaa |
289 |
Q |
| |
|
|||| |||||| |||||||| |||||||||| ||||||||| | || ||||| |||||||| | || | | |||| |||||||| || | ||||| |
|
|
| T |
35025583 |
tgcctgtgatgagtatatcatcaacataaactagcatgaaggtgttgtgctgatttgcatgtaagataaacagagatggatcacatttactagagcagaa |
35025682 |
T |
|
| Q |
290 |
accaaacttgagaagagtagatttcaatctctcaaaccatgccctgggaacttgctttaacccatatagggccttccttgtttagcttacaaaccaaaga |
389 |
Q |
| |
|
||| ||||| || ||||| ||||| || || |||||||| || || || | || ||||||||||||| ||| || || || ||||| |||||| | |
|
|
| T |
35025683 |
acccaacttaagcagagtggattttaacctttcaaaccaggctcttggggcctgttttaacccatataaggcttta----ttcagtttacacaccaaaaa |
35025778 |
T |
|
| Q |
390 |
agaatcagttgcttcaaaaccagggggttgagtcatgtacacctcttcctccaaataaccatttaaaaaggcattattgacatcaagttgttgaatacac |
489 |
Q |
| |
|
| |||| |||||||||||||| ||||| ||||||||||| |||||||| ||||| ||||||||||||||||| || ||||| ||||||||||| ||| |
|
|
| T |
35025779 |
gggatcaacagcttcaaaaccaggaggttgtgtcatgtacacttcttcctctaaatagccatttaaaaaggcattgtttacatccagttgttgaatgcac |
35025878 |
T |
|
| Q |
490 |
cacttgtttgtcactgctaaagtcaatacagtcatgacagttactggtttgacagctggtgaaaaggttgccttgtagtcaaagcctggcatttggtgga |
589 |
Q |
| |
|
||||||||||| ||||||| |||| ||| | | ||||||||||| || || |||| |||| ||| | || ||||||||||| |||||||| || | |
|
|
| T |
35025879 |
cacttgtttgtgactgctagtgtcagcacacttctcacagttactggctttaccactggaaaaaatgtttctttatagtcaaagccaggcatttgatgaa |
35025978 |
T |
|
| Q |
590 |
acccctttgccaccagccttgctttgtatttgtttatgctcccatcagggtt |
641 |
Q |
| |
|
|||| || || |||| ||||| ||||| || |||||||| ||||||||||| |
|
|
| T |
35025979 |
accctttggcaaccaatcttgccttgtacttatttatgcttccatcagggtt |
35026030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 309 - 364
Target Start/End: Original strand, 38324475 - 38324530
Alignment:
| Q |
309 |
gatttcaatctctcaaaccatgccctgggaacttgctttaacccatatagggcctt |
364 |
Q |
| |
|
||||||||||||||||||||||| |||||| | || ||||||||||| || ||||| |
|
|
| T |
38324475 |
gatttcaatctctcaaaccatgctctgggagcctgttttaacccatagagagcctt |
38324530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1270 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold1270
Description:
Target: scaffold1270; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 309 - 364
Target Start/End: Original strand, 828 - 883
Alignment:
| Q |
309 |
gatttcaatctctcaaaccatgccctgggaacttgctttaacccatatagggcctt |
364 |
Q |
| |
|
||||||||||||||||||||||| |||||| | || ||||||||||| || ||||| |
|
|
| T |
828 |
gatttcaatctctcaaaccatgctctgggagcctgttttaacccatagagagcctt |
883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 309 - 364
Target Start/End: Complemental strand, 162872 - 162817
Alignment:
| Q |
309 |
gatttcaatctctcaaaccatgccctgggaacttgctttaacccatatagggcctt |
364 |
Q |
| |
|
||||||||||||||||||||||| |||||| | || ||||||||||| || ||||| |
|
|
| T |
162872 |
gatttcaatctctcaaaccatgctctgggagcctgttttaacccatagagagcctt |
162817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 309 - 364
Target Start/End: Complemental strand, 172174 - 172119
Alignment:
| Q |
309 |
gatttcaatctctcaaaccatgccctgggaacttgctttaacccatatagggcctt |
364 |
Q |
| |
|
||||||||||||||||||||||| |||||| | || ||||||||||| || ||||| |
|
|
| T |
172174 |
gatttcaatctctcaaaccatgctctgggagcctgttttaacccatagagagcctt |
172119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 309 - 364
Target Start/End: Complemental strand, 29655280 - 29655225
Alignment:
| Q |
309 |
gatttcaatctctcaaaccatgccctgggaacttgctttaacccatatagggcctt |
364 |
Q |
| |
|
||||||||||||||||||||||| |||||| | || ||||||||||| || ||||| |
|
|
| T |
29655280 |
gatttcaatctctcaaaccatgctctgggagcctgttttaacccatagagagcctt |
29655225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 309 - 364
Target Start/End: Complemental strand, 36666028 - 36665973
Alignment:
| Q |
309 |
gatttcaatctctcaaaccatgccctgggaacttgctttaacccatatagggcctt |
364 |
Q |
| |
|
||||||||||||||||||||||| |||||| | || ||||||||||| || ||||| |
|
|
| T |
36666028 |
gatttcaatctctcaaaccatgctctgggagcctgttttaacccatagagagcctt |
36665973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 309 - 364
Target Start/End: Original strand, 36675747 - 36675802
Alignment:
| Q |
309 |
gatttcaatctctcaaaccatgccctgggaacttgctttaacccatatagggcctt |
364 |
Q |
| |
|
||||||||||||||||||||||| |||||| | || ||||||||||| || ||||| |
|
|
| T |
36675747 |
gatttcaatctctcaaaccatgctctgggagcctgttttaacccatagagagcctt |
36675802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 309 - 364
Target Start/End: Complemental strand, 12508225 - 12508170
Alignment:
| Q |
309 |
gatttcaatctctcaaaccatgccctgggaacttgctttaacccatatagggcctt |
364 |
Q |
| |
|
||||||||||||||||||||||| |||||| | || ||||||||||| || ||||| |
|
|
| T |
12508225 |
gatttcaatctctcaaaccatgctctgggagcctgttttaacccatagagagcctt |
12508170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 309 - 364
Target Start/End: Original strand, 14677701 - 14677756
Alignment:
| Q |
309 |
gatttcaatctctcaaaccatgccctgggaacttgctttaacccatatagggcctt |
364 |
Q |
| |
|
||||||||||||||||||||||| |||||| | || ||||||||||| || ||||| |
|
|
| T |
14677701 |
gatttcaatctctcaaaccatgctctgggagcctgttttaacccatagagagcctt |
14677756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 309 - 364
Target Start/End: Complemental strand, 39590665 - 39590610
Alignment:
| Q |
309 |
gatttcaatctctcaaaccatgccctgggaacttgctttaacccatatagggcctt |
364 |
Q |
| |
|
||||||||||||||||||||||| |||||| | || ||||||||||| || ||||| |
|
|
| T |
39590665 |
gatttcaatctctcaaaccatgctctgggagcctgttttaacccatagagagcctt |
39590610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 309 - 364
Target Start/End: Complemental strand, 29890343 - 29890288
Alignment:
| Q |
309 |
gatttcaatctctcaaaccatgccctgggaacttgctttaacccatatagggcctt |
364 |
Q |
| |
|
||||||||||||||||||||||| |||||| | || ||||||||||| || ||||| |
|
|
| T |
29890343 |
gatttcaatctctcaaaccatgctctgggagcctgttttaacccatagagagcctt |
29890288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 309 - 364
Target Start/End: Original strand, 52605827 - 52605882
Alignment:
| Q |
309 |
gatttcaatctctcaaaccatgccctgggaacttgctttaacccatatagggcctt |
364 |
Q |
| |
|
||||||||||||||||||||||| |||||| | || ||||||||||| || ||||| |
|
|
| T |
52605827 |
gatttcaatctctcaaaccatgctctgggagcctgttttaacccatagagagcctt |
52605882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 447 - 485
Target Start/End: Complemental strand, 16987911 - 16987873
Alignment:
| Q |
447 |
accatttaaaaaggcattattgacatcaagttgttgaat |
485 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
16987911 |
accatgtaaaaaggcattattgacatcaagttgatgaat |
16987873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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