View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11581_low_62 (Length: 231)
Name: NF11581_low_62
Description: NF11581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11581_low_62 |
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Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-107; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 37183600 - 37183819
Alignment:
| Q |
1 |
ttaacagtctttgcgtccaaatctgatataattccacagatcatctccaacaacactgaacggaattttacagactttgccaagcaattcttagcaatat |
100 |
Q |
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| T |
37183600 |
ttaacattcttttcgtccaaatctgatataattccacagatcatctccaacaacaccgaacggaattttacagactttgccaagcaattcttagcaatat |
37183699 |
T |
|
| Q |
101 |
ctccatgcttaccgataatttttcttaacatcggcataaattccggtttcacttggtatccattgatcgtatcctcaggccggctttgtacatttgaatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |
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| T |
37183700 |
ctccatgcttaccgataatttttcttaacatcggcataaattccggtttcacttggtatccattaatcgtatcctcaggccggcttcgtacatttgaatc |
37183799 |
T |
|
| Q |
201 |
aacctcatcgccatcttcat |
220 |
Q |
| |
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||||||||| |||||||||| |
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| T |
37183800 |
aacctcatcaccatcttcat |
37183819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 37194732 - 37194951
Alignment:
| Q |
1 |
ttaacagtctttgcgtccaaatctgatataattccacagatcatctccaacaacactgaacggaattttacagactttgccaagcaattcttagcaatat |
100 |
Q |
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|||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37194732 |
ttaacattcttttcgtccaaatctgatataattccacagatcatctccaacaacaccgaacggaattttacagactttgccaagcaattcttagcaatat |
37194831 |
T |
|
| Q |
101 |
ctccatgcttaccgataatttttcttaacatcggcataaattccggtttcacttggtatccattgatcgtatcctcaggccggctttgtacatttgaatc |
200 |
Q |
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| T |
37194832 |
ctccatgcttaccgataatttttcttaacatcggcataaattccggtttcacttggtatccattaatcgtatcctcaggccggcttcgtacatttgaatc |
37194931 |
T |
|
| Q |
201 |
aacctcatcgccatcttcat |
220 |
Q |
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||||||||| |||||||||| |
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| T |
37194932 |
aacctcatcaccatcttcat |
37194951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 25 - 186
Target Start/End: Original strand, 37202695 - 37202856
Alignment:
| Q |
25 |
gatataattccacagatcatctccaacaacactgaacggaattttacagactttgccaagcaattcttagcaatatctccatgcttaccgataatttttc |
124 |
Q |
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||||| |||||||| || |||||||||||| |||||||| ||| || ||||||| ||| ||||| |||||||||||||| ||||| | ||| |||||| |
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| T |
37202695 |
gatatgattccacaaattatctccaacaacgctgaacggcctttcactgactttgtcaaacaattattagcaatatctccgtgcttgctgattatttttg |
37202794 |
T |
|
| Q |
125 |
ttaacatcggcataaattccggtttcacttggtatccattgatcgtatcctcaggccggctt |
186 |
Q |
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| T |
37202795 |
ctaatatgggcatgaattcctgcttcacttgatatccattaatcgtttcctcaggccggctt |
37202856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 15 - 209
Target Start/End: Original strand, 37212057 - 37212251
Alignment:
| Q |
15 |
gtccaaatctgatataattccacagatcatctccaacaacactgaacggaattttacagactttgccaagcaattcttagcaatatctccatgcttaccg |
114 |
Q |
| |
|
||||||||||||||| ||| |||||||| | ||||| || ||||||| ||||| || ||||||| || |||||||| | |||||||||||| || ||| |
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| T |
37212057 |
gtccaaatctgatattatttcacagatcgtatccaagaaagctgaacgaaatttcaccgactttgtcacacaattcttggtaatatctccatgtttgccg |
37212156 |
T |
|
| Q |
115 |
ataatttttcttaacatcggcataaattccggtttcacttggtatccattgatcgtatcctcaggccggctttgtacatttgaatcaacctcatc |
209 |
Q |
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|
|||||||||||||| |||| ||||||||| || |||||||| ||| ||| | | | ||||||||| ||||||| | | |||||||||||||| |
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| T |
37212157 |
ataatttttcttaatatcgacataaattctggcttcacttgatatatattaaccatgtcctcaggctggctttgcatttcagaatcaacctcatc |
37212251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 128
Target Start/End: Original strand, 37180587 - 37180684
Alignment:
| Q |
30 |
aattccacagatcatctccaacaacactgaacggaattttacagactttgccaagcaattcttagcaatatctccatgcttaccgataatttttcttaa |
128 |
Q |
| |
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|||||||||||| ||||||||||| |||||| ||| || ||||||| || || |||||||| |||||||||||||| | ||||||||||||||| |
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| T |
37180587 |
aattccacagatgatctccaacaatttcgaacggtttttcaccgactttgtcacaca-ttcttagctatatctccatgcttgctgataatttttcttaa |
37180684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 128
Target Start/End: Original strand, 7527711 - 7527817
Alignment:
| Q |
22 |
tctgatataattccacagatcatctccaacaacactgaacggaattttacagactttgccaagcaattcttagcaatatctccatgcttaccgataattt |
121 |
Q |
| |
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||||| || ||| |||||||||| |||||||| ||| ||||||| |||| |||||| ||||||||| ||||||||||||||||| ||||||| || |
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| T |
7527711 |
tctgaaatgatttcacagatcattcccaacaacgctgcacggaatcttaccaactttgaagtgcaattcttcgcaatatctccatgcttgccgataactt |
7527810 |
T |
|
| Q |
122 |
ttcttaa |
128 |
Q |
| |
|
||||||| |
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|
| T |
7527811 |
ttcttaa |
7527817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 138
Target Start/End: Complemental strand, 414127 - 414034
Alignment:
| Q |
45 |
ctccaacaacactgaacggaattttacagactttgccaagcaattcttagcaatatctccatgcttaccgataatttttcttaacatcggcata |
138 |
Q |
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|||||| |||| ||||||||| || ||| |||||| | ||| ||||| |||||||||||||||| ||||| ||||||||||| | ||||||| |
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| T |
414127 |
ctccaagaacaatgaacggaacttcacaaactttgtcgtgcagttcttcacaatatctccatgcttgccgatgatttttcttaataccggcata |
414034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 85 - 163
Target Start/End: Complemental strand, 5365232 - 5365154
Alignment:
| Q |
85 |
caattcttagcaatatctccatgcttaccgataatttttcttaacatcggcataaattccggtttcacttggtatccat |
163 |
Q |
| |
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|||||||||| ||||| ||||||||| |||||||||||||||| || ||||| ||||| || ||||||| ||||||| |
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| T |
5365232 |
caattcttagaaatatatccatgcttgtcgataatttttcttaatataggcatgaattctggcttcactttatatccat |
5365154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 220
Target Start/End: Complemental strand, 5366948 - 5366813
Alignment:
| Q |
85 |
caattcttagcaatatctccatgcttaccgataatttttcttaacatcggcataaattccggtttcacttggtatccattgatcgtatcctcaggccggc |
184 |
Q |
| |
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|||||||||| ||||| || |||||| | | ||||||||||||| || ||||| ||||| || ||||||| ||||| || | ||| || |||||| ||| |
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| T |
5366948 |
caattcttagaaatatatcaatgcttgctggtaatttttcttaatataggcatgaattctggcttcacttcgtatcgataaaccgtgtcttcaggctggc |
5366849 |
T |
|
| Q |
185 |
tttgtacatttgaatcaacctcatcgccatcttcat |
220 |
Q |
| |
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||||||| | |||| |||| |||| ||||| |||| |
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| T |
5366848 |
tttgtacttccgaatgaaccccatcaccatcatcat |
5366813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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