View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11581_low_63 (Length: 225)
Name: NF11581_low_63
Description: NF11581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11581_low_63 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 46599397 - 46599173
Alignment:
| Q |
1 |
cgactggttgaacaacatggagcaagaaactggtcactcatcagccgctacataaaaggtcgttccggcaagtcatgtcgtctccggtggtgtaatcagc |
100 |
Q |
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| T |
46599397 |
cgactggttgaacaacatggagcaagaaactggtcactcatcagccgctacataaaaggtcgttccggcaagtcatgtcgtctccggtggtgtaatcagc |
46599298 |
T |
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| Q |
101 |
tgagtcccaccgtggaacaccgtccattttcttcacaagaagatgaaacaatcatagcggcgcatgctcaatatggtaaccgttgggctaccattgcaag |
200 |
Q |
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| T |
46599297 |
tgagtcccaccgtggaacaccgtccattttcttcacaagaagatgaaacaatcatagcggcgcatgctcaatatggtaaccgttgggctaccattgcaag |
46599198 |
T |
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| Q |
201 |
gcttttacctggtagaactgataat |
225 |
Q |
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| T |
46599197 |
gcttttacctggtagaactgataat |
46599173 |
T |
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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 113
Target Start/End: Original strand, 35747986 - 35748041
Alignment:
| Q |
58 |
ggtcgttccggcaagtcatgtcgtctccggtggtgtaatcagctgagtcccaccgt |
113 |
Q |
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| T |
35747986 |
ggtcgttcaggaaaatcatgccgtctacggtggtgtaatcagctgagtccaaccgt |
35748041 |
T |
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