View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11581_low_8 (Length: 575)
Name: NF11581_low_8
Description: NF11581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11581_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 493; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 18 - 568
Target Start/End: Original strand, 27935935 - 27936482
Alignment:
| Q |
18 |
cataatggagtttatacaaattaatatagttgatcacaaatagacttgtaatctagttaaggcttgaatggacatttcattagttccattttctgcataa |
117 |
Q |
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| T |
27935935 |
cataatggagtttatacaaattaatatagttgatcacaagtagacttgtaatctagttaaggtttgaatggacattacattagttccattttctgcataa |
27936034 |
T |
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| Q |
118 |
ttaatgtttcaaaatatgggaacaagtttgtttattcataactaagcattagaactttggcaatcgaagagagggtgtaggagaaatttactagtcgaat |
217 |
Q |
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| T |
27936035 |
ttaatgtttcaaaatatgggaacaagtttgtttattcataactaagcatta--actttggcaatcgaagagagggtgtaggagaaatttactagtcgaat |
27936132 |
T |
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| Q |
218 |
atagttatggatacggtaaatattggcctagtcataaatgtaacttagttgtgtttctactaaatatgtgtgctagatcatattatttcagtatacatat |
317 |
Q |
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| T |
27936133 |
atagttatggatacggtaaatattggcctagtcataaatgtaacttagttgtgtttctactaaatatgtgtgctagatcatattatttcagtatacatat |
27936232 |
T |
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| Q |
318 |
atggtc--ataatgttaagatcttttctactattttcaaaataacaacaacatttaatcagtgttggcatgcttgcttgtagtaacttttgttatagtaa |
415 |
Q |
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| T |
27936233 |
atggtcatataatgttaagatcttttctactattttcaaaataacaacaacatttaatcagtgttggcatgcttgcttgtagtaacttttgtta---taa |
27936329 |
T |
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| Q |
416 |
catttttcccaaattcaagcatgccttgtattgcgcttgaggcttctcaatatatttttctgttaaaataaatagcaaccatttatcaatcgggtcttgt |
515 |
Q |
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| T |
27936330 |
catttttctcaaattcaagcatgccttgcattgagcttgaggcttctcaatatatttttctgttaaaataaatagcaaccatttatcaatcgggtcttgt |
27936429 |
T |
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| Q |
516 |
taacgaggtgcatagaagcttgaatcattaatatttcatccaatttcatctca |
568 |
Q |
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| T |
27936430 |
taacgaggtgcatagaagcttgaatcattaatatttcatccaatttcatctca |
27936482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 136 - 207
Target Start/End: Original strand, 43571598 - 43571668
Alignment:
| Q |
136 |
ggaacaagtttgtttattcataactaagcattagaactttggcaatcgaagagagggtgtaggagaaattta |
207 |
Q |
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| T |
43571598 |
ggaacaagtttgtttattcataactaagcataagaa-tttggcaactgaagagacaatataggagaaattta |
43571668 |
T |
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