View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11581_low_9 (Length: 572)
Name: NF11581_low_9
Description: NF11581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11581_low_9 |
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| [»] chr4 (2 HSPs) |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 463; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 1 - 572
Target Start/End: Complemental strand, 30506479 - 30505917
Alignment:
| Q |
1 |
ataatgttacaaataaaagtgttcctctcacttcggtcttcaacaaaatctctcttacttgccaaccattttccctcctaactagagtatataggttatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30506479 |
ataatgttacaaataaaagtgttcctctcacttcagtcttcaacaaaatctctcttacttgccaaccattttccctcctaactagagtatataggttatt |
30506380 |
T |
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| Q |
101 |
aacttattttgattatttttgcaatatatat---tgtaatgctggctcagtattaatatataatttgttcgtatccttttcaattcggggcctcttaata |
197 |
Q |
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| T |
30506379 |
aacttattttgattatttttgcaatatatatatatgtaatgctgcctcagtattaatatatactttgttcataaccttttcaattcttggcctcttaata |
30506280 |
T |
|
| Q |
198 |
attatatatccttcgatttaatcctctatatagcttgtccaccacttgaatcaaggattgaaaggagcaccttgaaaatgtgaaattacttgagcattgc |
297 |
Q |
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| T |
30506279 |
attatatatcct----------cctctata--gcttgtccaccacttgaatcaagggttaaaaggagcaccttgaaaatgtgaaattacttgagcattgc |
30506192 |
T |
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| Q |
298 |
tagacctatgttcgttcctttgatcaaatgatatgaaatttgaatgataatattcaacaaatgatccattagtactatttttaccattcattacctcatt |
397 |
Q |
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| T |
30506191 |
tagacctatgttggttcccttgatcaaatgatatgaaatttgaatgataatattcaacaaatgatccattagtactatttttaccattcattacctcatt |
30506092 |
T |
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| Q |
398 |
cccactttgacccttcatagtttttccaagaatagagtctttcataatcaatgaattaccaccacactgtcttggttgagtttgatagaaaactttggac |
497 |
Q |
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| T |
30506091 |
cccactttgacccttcatagtttttccaagaatagagtctttcataatcaatgaattaccaccacactgtcttggttgagtttgatagaaaactttggac |
30505992 |
T |
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| Q |
498 |
acaactaacactccttctttctcttcttcatcactcccaagatgatgctgatgcatcacccaattagttttctct |
572 |
Q |
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| T |
30505991 |
acaactaacactccttctttctcttcttcatcactcccaagatgatactgatgcatcacccaatttgttttctct |
30505917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 452 - 571
Target Start/End: Original strand, 34829831 - 34829950
Alignment:
| Q |
452 |
attaccaccacactgtcttggttgagtttgatagaaaactttggacacaactaacactccttctttctcttcttcatcactcccaagatgatgctgatgc |
551 |
Q |
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| T |
34829831 |
attaccaccacattgtcgaggttgtgtttggtaaaacacctttgaaacaactaattcaccatctttctcttcttcattactaccaaggtggtattgatgc |
34829930 |
T |
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| Q |
552 |
atcacccaattagttttctc |
571 |
Q |
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| T |
34829931 |
atcacccaattggtcttctc |
34829950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 455 - 572
Target Start/End: Complemental strand, 38887192 - 38887075
Alignment:
| Q |
455 |
accaccacactgtcttggttgagtttgatagaaaactttggacacaactaacactccttctttctcttcttcatcactcccaagatgatgctgatgcatc |
554 |
Q |
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||||||||| ||||| || || ||||| |||||||||||||| || || || | ||||||||||| ||||||| | |||||||| | || ||||| |
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| T |
38887192 |
accaccacattgtctaggctgtgtttggtagaaaactttggaaactaccaattccccttctttctcctcttcattgtttccaagatggtattggtgcata |
38887093 |
T |
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| Q |
555 |
acccaattagttttctct |
572 |
Q |
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| T |
38887092 |
acccaatttgttttctct |
38887075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 271 - 335
Target Start/End: Complemental strand, 38887370 - 38887306
Alignment:
| Q |
271 |
gaaaatgtgaaattacttgagcattgctagacctatgttcgttcctttgatcaaatgatatgaaa |
335 |
Q |
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| T |
38887370 |
gaaaatgtgaaatcacttgagcattgtttgatctatgttgttccccttgatcaaaagatatgaaa |
38887306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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