View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11582_high_18 (Length: 416)

Name: NF11582_high_18
Description: NF11582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11582_high_18
NF11582_high_18
[»] chr3 (8 HSPs)
chr3 (133-396)||(52087447-52087712)
chr3 (13-84)||(52088138-52088209)
chr3 (138-204)||(11511300-11511366)
chr3 (138-204)||(55122135-55122201)
chr3 (140-204)||(41755056-41755120)
chr3 (147-201)||(11510222-11510276)
chr3 (138-183)||(50122383-50122428)
chr3 (138-198)||(55121581-55121641)
[»] chr6 (3 HSPs)
chr6 (136-238)||(19757887-19757993)
chr6 (144-183)||(5723058-5723097)
chr6 (147-183)||(25987139-25987175)
[»] chr7 (10 HSPs)
chr7 (138-204)||(46088963-46089029)
chr7 (147-248)||(31873857-31873960)
chr7 (142-204)||(46089676-46089738)
chr7 (147-204)||(46741412-46741469)
chr7 (147-238)||(4997298-4997393)
chr7 (147-238)||(19804633-19804727)
chr7 (147-238)||(31873344-31873438)
chr7 (138-218)||(47405451-47405533)
chr7 (138-238)||(35200787-35200891)
chr7 (203-247)||(38858016-38858061)
[»] chr5 (2 HSPs)
chr5 (138-238)||(9070420-9070523)
chr5 (138-247)||(18848039-18848151)
[»] chr2 (6 HSPs)
chr2 (140-248)||(16118977-16119088)
chr2 (138-236)||(16119119-16119220)
chr2 (147-204)||(33667747-33667804)
chr2 (147-204)||(33667877-33667934)
chr2 (147-220)||(43977555-43977631)
chr2 (147-183)||(16340580-16340616)
[»] scaffold0153 (2 HSPs)
scaffold0153 (138-204)||(17390-17456)
scaffold0153 (138-221)||(16854-16939)
[»] chr1 (7 HSPs)
chr1 (140-238)||(10974750-10974851)
chr1 (138-221)||(21263330-21263415)
chr1 (139-238)||(33205427-33205529)
chr1 (202-248)||(46341582-46341629)
chr1 (147-238)||(52427529-52427623)
chr1 (192-248)||(26354554-26354613)
chr1 (138-194)||(32160722-32160778)
[»] chr8 (1 HSPs)
chr8 (140-204)||(3642524-3642589)
[»] chr4 (1 HSPs)
chr4 (147-204)||(40900250-40900307)


Alignment Details
Target: chr3 (Bit Score: 159; Significance: 2e-84; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 133 - 396
Target Start/End: Complemental strand, 52087712 - 52087447
Alignment:
Q  133 gtgttcttcggcaattaactgcagccggttcattacttcggtagttaactggcgaaggggtattttcgtctt--acatatgtttttcagcctatcaaatg 230  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||  |||||||||||||||||||||||||     
T  52087712 gtgttcttcggcacttaactgcagccggttcattacttcggtagttaactgtcgagggggtattttcgtcttttacatatgtttttcagcctatcaaata 52087613  T
Q  231 tgtcaacattaattttcttgcaccttttctagtcatattttttaggggagagaataaagaaaagaacaagaaagaaatgtgagaacatagctgcaacaca 330  Q
    ||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| | ||||||||||| ||| | |||||    
T  52087612 tgtcaacgttaattttcttgcaccttttctagtcatatttttttggggtgagaataaagaaaagaacaagaaagtattgtgagaacatcgctcccacaca 52087513  T
Q  331 acacatatgaatgactgttcttcattgcagaatgatagtgtaactgaaaagacattatagtactca 396  Q
    |||| | || | ||||||||||||||| || | ||| ||||| ||| ||||||||| || ||||||    
T  52087512 acacctgtgtacgactgttcttcattgaagcacgatggtgtacctgcaaagacattctaatactca 52087447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 52088209 - 52088138
Alignment:
Q  13 tgaagtttgttgaattgttatgcttgctaacgtctgagatttagtcactaaagtactaaagcaatctttgca 84  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  52088209 tgaagtttgttgaattgttatgcttgctaacgtctgagatttagtcactaaagcactaaagcaatctttgca 52088138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 138 - 204
Target Start/End: Original strand, 11511300 - 11511366
Alignment:
Q  138 cttcggcaattaactgcagccggttcattacttcggtagttaactggcgaaggggtattttcgtctt 204  Q
    |||||| | ||||||||||||||||||||| ||||||||||||||| ||| | || |||||||||||    
T  11511300 cttcggtagttaactgcagccggttcattatttcggtagttaactgtcgaggaggcattttcgtctt 11511366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 138 - 204
Target Start/End: Original strand, 55122135 - 55122201
Alignment:
Q  138 cttcggcaattaactgcagccggttcattacttcggtagttaactggcgaaggggtattttcgtctt 204  Q
    |||||| | ||||||||| ||||||||||| ||||||||||||||| ||| |||| |||||||||||    
T  55122135 cttcgggagttaactgcaaccggttcattatttcggtagttaactgtcgagggggcattttcgtctt 55122201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 204
Target Start/End: Original strand, 41755056 - 41755120
Alignment:
Q  140 tcggcaattaactgcagccggttcattacttcggtagttaactggcgaaggggtattttcgtctt 204  Q
    |||||| |||| |||||||||||||||| ||| ||||||||||| ||| |||  |||||||||||    
T  41755056 tcggcagttaattgcagccggttcattatttcagtagttaactgtcgaggggacattttcgtctt 41755120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 147 - 201
Target Start/End: Complemental strand, 11510276 - 11510222
Alignment:
Q  147 ttaactgcagccggttcattacttcggtagttaactggcgaaggggtattttcgt 201  Q
    ||||||||||| ||||||||| ||||||||||||| | ||| ||| |||||||||    
T  11510276 ttaactgcagctggttcattatttcggtagttaaccgtcgaggggatattttcgt 11510222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 183
Target Start/End: Complemental strand, 50122428 - 50122383
Alignment:
Q  138 cttcggcaattaactgcagccggttcattacttcggtagttaactg 183  Q
    |||||||| ||||||||||||||||| | | |||||||||||||||    
T  50122428 cttcggcagttaactgcagccggttcttaatttcggtagttaactg 50122383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 198
Target Start/End: Complemental strand, 55121641 - 55121581
Alignment:
Q  138 cttcggcaattaactgcagccggttcattacttcggtagttaactggcgaaggggtatttt 198  Q
    |||||| | ||||| ||| ||||||||||| ||||||||||||||| ||| |||| |||||    
T  55121641 cttcggtagttaaccgcaaccggttcattatttcggtagttaactgccgagggggcatttt 55121581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 136 - 238
Target Start/End: Original strand, 19757887 - 19757993
Alignment:
Q  136 ttcttcggcaattaactgcagccggttcatt-acttcggtagttaactggcgaaggggtattttcgtcttacatatg--tttttcag-cctatcaaatgt 231  Q
    |||||||||| ||||||||||||||||| || |||||||||||||||||  | ||| |||||||||||||  |||||  |||||||| ||||||| ||||    
T  19757887 ttcttcggcagttaactgcagccggttctttaacttcggtagttaactgctgcaggagtattttcgtcttttatatgtatttttcagccctatcatatgt 19757986  T
Q  232 gtcaaca 238  Q
    |||||||    
T  19757987 gtcaaca 19757993  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 144 - 183
Target Start/End: Complemental strand, 5723097 - 5723058
Alignment:
Q  144 caattaactgcagccggttcattacttcggtagttaactg 183  Q
    |||||||||||||||||||||||| |||| ||||||||||    
T  5723097 caattaactgcagccggttcattatttcgatagttaactg 5723058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 147 - 183
Target Start/End: Complemental strand, 25987175 - 25987139
Alignment:
Q  147 ttaactgcagccggttcattacttcggtagttaactg 183  Q
    |||||||||||| |||||||| |||||||||||||||    
T  25987175 ttaactgcagccagttcattatttcggtagttaactg 25987139  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 138 - 204
Target Start/End: Complemental strand, 46089029 - 46088963
Alignment:
Q  138 cttcggcaattaactgcagccggttcattacttcggtagttaactggcgaaggggtattttcgtctt 204  Q
    |||||| | ||||||||||||||||||||| ||||||||||||||||||| |||| ||||| |||||    
T  46089029 cttcgggagttaactgcagccggttcattatttcggtagttaactggcgagggggcatttttgtctt 46088963  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 147 - 248
Target Start/End: Original strand, 31873857 - 31873960
Alignment:
Q  147 ttaactgcagccggttcattacttcggtagttaactggcgaaggggtattttcgtcttacatatgt-ttttcag-cctatcaaatgtgtcaacattaatt 244  Q
    |||||||||||||||||   || |||||||||||||| || || ||||||||||||||  | |||| ||||||| ||||||| |||||||||||  ||||    
T  31873857 ttaactgcagccggttccaaacatcggtagttaactgccgtagaggtattttcgtcttttacatgtgttttcagccctatcatatgtgtcaacaacaatt 31873956  T
Q  245 ttct 248  Q
    ||||    
T  31873957 ttct 31873960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 142 - 204
Target Start/End: Original strand, 46089676 - 46089738
Alignment:
Q  142 ggcaattaactgcagccggttcattacttcggtagttaactggcgaaggggtattttcgtctt 204  Q
    |||| |||||||||||||||||| || || |||||||||||| ||| |||| |||||||||||    
T  46089676 ggcagttaactgcagccggttcactattttggtagttaactgccgagggggcattttcgtctt 46089738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 147 - 204
Target Start/End: Original strand, 46741412 - 46741469
Alignment:
Q  147 ttaactgcagccggttcattacttcggtagttaactggcgaaggggtattttcgtctt 204  Q
    ||||||||||||| ||||||| |||||||||||| || |||||||  |||||||||||    
T  46741412 ttaactgcagccgattcattatttcggtagttaattgtcgaagggacattttcgtctt 46741469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 238
Target Start/End: Complemental strand, 4997393 - 4997298
Alignment:
Q  147 ttaactgcagccggtt-cattacttcggtagttaactggcgaaggggtattttcgtc--ttacatatgtttttc-agcctatcaaatgtgtcaaca 238  Q
    ||||||| |||||||| ||  ||||||||||||||||| || |||||||||||||||  |||||| |||||||| | ||||||| |||||| ||||    
T  4997393 ttaactgtagccggtttcaaaacttcggtagttaactgccgtaggggtattttcgtcttttacatgtgtttttcaaccctatcatatgtgtaaaca 4997298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 147 - 238
Target Start/End: Original strand, 19804633 - 19804727
Alignment:
Q  147 ttaactgcagccggttcattacttcggtagttaactggcgaaggggtattttcgtc--ttacatatgtttttcag-cctatcaaatgtgtcaaca 238  Q
    |||||||||||||||||   |||||||||||||| || || | | | |||||||||  |||||| |||||||||| ||||||| |||||||||||    
T  19804633 ttaactgcagccggttccaaacttcggtagttaattgtcgcatgagcattttcgtcttttacatgtgtttttcagtcctatcacatgtgtcaaca 19804727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 147 - 238
Target Start/End: Complemental strand, 31873438 - 31873344
Alignment:
Q  147 ttaactgcagccggttcattacttcggtagttaactggcgaaggggtattttcgtc--ttacatatgtttttcagcc-tatcaaatgtgtcaaca 238  Q
    |||||||||| ||||||   ||||||||||||||||| || ||| | |||||| ||  |||||| |||||||||||| ||||| |||||||||||    
T  31873438 ttaactgcagtcggttctaaacttcggtagttaactgccgcaggagcattttcatcttttacatgtgtttttcagccttatcatatgtgtcaaca 31873344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 138 - 218
Target Start/End: Original strand, 47405451 - 47405533
Alignment:
Q  138 cttcggcaattaactgcagccggttcattacttcggtagttaactggcgaaggggtattttcgtc--ttacatatgtttttca 218  Q
    |||||| | ||||||||||||||||| ||| ||| ||||||||||| ||| |||  |||||||||  |||||| |||||||||    
T  47405451 cttcggtagttaactgcagccggttctttatttcagtagttaactgccgaggggacattttcgtcttttacatgtgtttttca 47405533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 238
Target Start/End: Original strand, 35200787 - 35200891
Alignment:
Q  138 cttcggcaattaactgcagccgg-ttcattacttcggtagttaactggcgaaggggtattttcgtc--ttacatatgtttttcag-cctatcaaatgtgt 233  Q
    |||||| | |||||||||||||| ||||  |||||||||| |||||| || ||||| |||||| ||  |||||| |||||||||| ||||||| ||||||    
T  35200787 cttcggtagttaactgcagccggtttcaaaacttcggtagctaactgccgcaggggcattttcatcttttacatgtgtttttcagccctatcatatgtgt 35200886  T
Q  234 caaca 238  Q
     ||||    
T  35200887 aaaca 35200891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 247
Target Start/End: Original strand, 38858016 - 38858061
Alignment:
Q  203 ttacatatgtttttcagcc-tatcaaatgtgtcaacattaattttc 247  Q
    |||||| |||||||||||| |||||||||||||||||| |||||||    
T  38858016 ttacatgtgtttttcagccctatcaaatgtgtcaacatcaattttc 38858061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 138 - 238
Target Start/End: Original strand, 9070420 - 9070523
Alignment:
Q  138 cttcggcaattaactgcagccggttcattacttcggtagttaactggcgaaggggtattttcgtc--ttacatatgtttttcag-cctatcaaatgtgtc 234  Q
    |||||| | ||||||||||| ||||| ||||||||||||||||||| || |||  ||||||||||  |||||| | |||||||| ||||||| |||||||    
T  9070420 cttcggaagttaactgcagctggttccttacttcggtagttaactgccgcaggaatattttcgtcttttacatgtatttttcagtcctatcatatgtgtc 9070519  T
Q  235 aaca 238  Q
    ||||    
T  9070520 aaca 9070523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 247
Target Start/End: Original strand, 18848039 - 18848151
Alignment:
Q  138 cttcggcaattaactgcagccggttcattacttcggtagttaactggcgaaggggtattttcgtctt--acatatgtttttcagcc-tatcaaatgtgtc 234  Q
    |||||| | |||||||||| |||||    |||||||||||||| |   | ||||| |||||||||||  |||| |||||||||||| ||||| |||||||    
T  18848039 cttcggtagttaactgcagtcggttttaaacttcggtagttaattactgcaggggcattttcgtcttttacatgtgtttttcagccctatcatatgtgtc 18848138  T
Q  235 aacattaattttc 247  Q
    |||| ||||||||    
T  18848139 aacaataattttc 18848151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 140 - 248
Target Start/End: Complemental strand, 16119088 - 16118977
Alignment:
Q  140 tcggcaattaactgcagccggttcattacttcggtagttaactggcgaaggggtattttcgtc--ttacatatgtttttcag-cctatcaaatgtgtcaa 236  Q
    |||||| |||||||||| |||||  ||||||||||||||||| |  | ||||| |||||||||  |||||| |||||||||| ||||||| |||||||||    
T  16119088 tcggcagttaactgcagtcggtttcttacttcggtagttaaccgttgcaggggcattttcgtcatttacatgtgtttttcagccctatcatatgtgtcaa 16118989  T
Q  237 cattaattttct 248  Q
    ||  ||||||||    
T  16118988 cagcaattttct 16118977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 138 - 236
Target Start/End: Original strand, 16119119 - 16119220
Alignment:
Q  138 cttcggcaattaactgcagccggttcattacttcggtagttaactggcgaaggggtattttcgtc--ttacatatgtttttcagc-ctatcaaatgtgtc 234  Q
    |||| ||| ||||||||||||||||| ||||||||||||| |||||    | ||| |||||||||  |||||||||||||| ||| |||||| |||||||    
T  16119119 cttcagcagttaactgcagccggttctttacttcggtagtaaactgctacatgggcattttcgtcttttacatatgttttttagctctatcatatgtgtc 16119218  T
Q  235 aa 236  Q
    ||    
T  16119219 aa 16119220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 147 - 204
Target Start/End: Complemental strand, 33667804 - 33667747
Alignment:
Q  147 ttaactgcagccggttcattacttcggtagttaactggcgaaggggtattttcgtctt 204  Q
    ||||||||||||||||||||| ||||||||||||||| ||| |||  |||||| ||||    
T  33667804 ttaactgcagccggttcattatttcggtagttaactgccgaggggagattttcatctt 33667747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 147 - 204
Target Start/End: Original strand, 33667877 - 33667934
Alignment:
Q  147 ttaactgcagccggttcattacttcggtagttaactggcgaaggggtattttcgtctt 204  Q
    ||||||||||||||||||||| |||||||||||||||  || | || |||||||||||    
T  33667877 ttaactgcagccggttcattatttcggtagttaactgctgaggaggcattttcgtctt 33667934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 220
Target Start/End: Complemental strand, 43977631 - 43977555
Alignment:
Q  147 ttaactgcagccggtt-cattacttcggtagttaactggcgaaggggtattttcgtc--ttacatatgtttttcagc 220  Q
    |||||||||||||||| ||  ||||||||||||| ||| || ||||| |||||||||  |||||| |||||||||||    
T  43977631 ttaactgcagccggtttcaaaacttcggtagttagctgccgcaggggcattttcgtcttttacatgtgtttttcagc 43977555  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 147 - 183
Target Start/End: Original strand, 16340580 - 16340616
Alignment:
Q  147 ttaactgcagccggttcattacttcggtagttaactg 183  Q
    ||||||||| ||||||| |||||||||||||||||||    
T  16340580 ttaactgcaaccggttccttacttcggtagttaactg 16340616  T

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Target: scaffold0153 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 138 - 204
Target Start/End: Original strand, 17390 - 17456
Alignment:
Q  138 cttcggcaattaactgcagccggttcattacttcggtagttaactggcgaaggggtattttcgtctt 204  Q
    |||||| | ||||||||||||||||||||| ||||||||||||||| ||| |||  |||||||||||    
T  17390 cttcggtagttaactgcagccggttcattatttcggtagttaactgccgaggggtcattttcgtctt 17456  T

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Target: scaffold0153; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 221
Target Start/End: Complemental strand, 16939 - 16854
Alignment:
Q  138 cttcggcaattaactgcagccggttcattacttcggtagttaactggcgaaggggtattttcgtc--ttacatatgtttttcagcc 221  Q
    |||||| | ||||||||| |||||||   ||||||||||||||||  || ||||| |||||||||  |||||| ||||||||||||    
T  16939 cttcggtagttaactgcaaccggttccaaacttcggtagttaactaccgcaggggcattttcgtcttttacatgtgtttttcagcc 16854  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 140 - 238
Target Start/End: Original strand, 10974750 - 10974851
Alignment:
Q  140 tcggcaattaactgcagccggttcattacttcggtagttaactggcgaaggggtattttcgtc--ttacatatgtttttcag-cctatcaaatgtgtcaa 236  Q
    |||||| ||||||||| ||||||| ||||||| ||||||||||| || || || |||||||||  ||| || |||||||||| ||||||| |||||||||    
T  10974750 tcggcagttaactgcaaccggttccttacttcagtagttaactgtcgcagaggcattttcgtcttttatatgtgtttttcagccctatcatatgtgtcaa 10974849  T
Q  237 ca 238  Q
    ||    
T  10974850 ca 10974851  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 138 - 221
Target Start/End: Complemental strand, 21263415 - 21263330
Alignment:
Q  138 cttcggcaattaactgcagccggttcattacttcggtagttaactggcgaaggggtattttcgtc--ttacatatgtttttcagcc 221  Q
    |||||| |||||||||||| ||||||   ||||||||||||||||| || |||||||||||| ||  |||||| ||||||||||||    
T  21263415 cttcgggaattaactgcagtcggttccaaacttcggtagttaactgccgcaggggtattttcatcttttacatgtgtttttcagcc 21263330  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 139 - 238
Target Start/End: Complemental strand, 33205529 - 33205427
Alignment:
Q  139 ttcggcaattaactgcagccggttcattacttcggtagttaactggcgaaggggtattttcgtc--ttacatatgtttttcag-cctatcaaatgtgtca 235  Q
    ||||||| |||||| ||||||||||   |||||||||| |||||| || || || |||||||||  |||||| |||||||||| ||||||| |||||| |    
T  33205529 ttcggcagttaactacagccggttccaaacttcggtaggtaactgccgcagaggcattttcgtcttttacatgtgtttttcagccctatcatatgtgtaa 33205430  T
Q  236 aca 238  Q
    |||    
T  33205429 aca 33205427  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 202 - 248
Target Start/End: Complemental strand, 46341629 - 46341582
Alignment:
Q  202 cttacatatgtttttcagcc-tatcaaatgtgtcaacattaattttct 248  Q
    |||||||| ||||||||||| |||||||||||||||||| ||||||||    
T  46341629 cttacatacgtttttcagccctatcaaatgtgtcaacatcaattttct 46341582  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 147 - 238
Target Start/End: Original strand, 52427529 - 52427623
Alignment:
Q  147 ttaactgcagccggttcattacttcggtagttaactggcgaaggggtattttcgtc--ttacatatgtttttcag-cctatcaaatgtgtcaaca 238  Q
    |||||||||||||||||   |||||||||||||||||  | || || |||||||||  |||||| |||||||||| ||||||| || ||||||||    
T  52427529 ttaactgcagccggttccaaacttcggtagttaactgtagcagaggcattttcgtcttttacatgtgtttttcagtcctatcatatatgtcaaca 52427623  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 248
Target Start/End: Original strand, 26354554 - 26354613
Alignment:
Q  192 gtattttcgtctt--acatatgtttttcag-cctatcaaatgtgtcaacattaattttct 248  Q
    |||||||||||||  ||||||||||||||| ||||||| ||| |||||||| ||||||||    
T  26354554 gtattttcgtcttttacatatgtttttcagccctatcatatgagtcaacatcaattttct 26354613  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 194
Target Start/End: Complemental strand, 32160778 - 32160722
Alignment:
Q  138 cttcggcaattaactgcagccggttcattacttcggtagttaactggcgaaggggta 194  Q
    |||||| | |||||||||||||||||   ||||||||||||||||| || |||||||    
T  32160778 cttcggaagttaactgcagccggttccaaacttcggtagttaactgccgcaggggta 32160722  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 204
Target Start/End: Original strand, 3642524 - 3642589
Alignment:
Q  140 tcggcaattaactgcagccggttcatta-cttcggtagttaactggcgaaggggtattttcgtctt 204  Q
    |||||| ||||||||| ||||||| ||| ||||| |||||||||| || | |||||||||||||||    
T  3642524 tcggcagttaactgcaaccggttctttaacttcgatagttaactgccgcatgggtattttcgtctt 3642589  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 204
Target Start/End: Complemental strand, 40900307 - 40900250
Alignment:
Q  147 ttaactgcagccggttcattacttcggtagttaactggcgaaggggtattttcgtctt 204  Q
    ||||||| |||||||| |||| |||| |||||||||| ||| |||| |||||||||||    
T  40900307 ttaactgtagccggtttattatttcgatagttaactgccgatggggcattttcgtctt 40900250  T

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