View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11582_high_20 (Length: 391)
Name: NF11582_high_20
Description: NF11582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11582_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 19 - 390
Target Start/End: Complemental strand, 41615131 - 41614760
Alignment:
| Q |
19 |
cctagcaaatattctttagctcaaactattaaataatggaacaagaagagataaagtgaatattcttgaactattgaaaaatagaataatctgaatgcaa |
118 |
Q |
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| T |
41615131 |
cctagcaaatattctttagctcaaactattaaataatggaacaagaagagataaagtgaatattcttgaactattgaaaaatagaataatctgaatgcaa |
41615032 |
T |
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| Q |
119 |
ttggaaaggagtgtctatacaagaggaactcaaagagatatagtagactaatccaacctaattagattggttataataacaaactaaccaattagggaag |
218 |
Q |
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| T |
41615031 |
ttggaaaggagtgtctatacaagaggaactcaaagagatatagtagactaatccaacctaattagattggttataataacaaactaaccaattagggaag |
41614932 |
T |
|
| Q |
219 |
gctaactgaaaattaaaatacttctttttgttgactatattacaaacttttcacttcttgcaatatagttaaccaagtggaacgttatctataaataatt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41614931 |
gctaactgaaaattaaaatacttctttttgttgactatattacaaacttttcacttcttgcaatatagttaaccaagtggaacgttatctataaataatt |
41614832 |
T |
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| Q |
319 |
tgatcatgttgctaacaaattctccctttccataccgatttctaattactaactcttgcttataataatatt |
390 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
41614831 |
tgatcatgttgctaacaaattctccctttccataccgatttctaactactaactcttgcttataataatatt |
41614760 |
T |
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