View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11582_high_3 (Length: 795)

Name: NF11582_high_3
Description: NF11582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11582_high_3
NF11582_high_3
[»] chr3 (3 HSPs)
chr3 (14-416)||(52675862-52676269)
chr3 (504-605)||(52675691-52675793)
chr3 (678-754)||(52675539-52675615)
[»] chr8 (2 HSPs)
chr8 (490-541)||(1838421-1838472)
chr8 (498-550)||(473503-473555)
[»] chr5 (2 HSPs)
chr5 (489-550)||(1243001-1243062)
chr5 (498-538)||(6689905-6689945)
[»] chr7 (2 HSPs)
chr7 (490-546)||(1824586-1824642)
chr7 (490-541)||(41521003-41521054)
[»] chr1 (1 HSPs)
chr1 (501-555)||(23920803-23920857)


Alignment Details
Target: chr3 (Bit Score: 359; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 14 - 416
Target Start/End: Complemental strand, 52676269 - 52675862
Alignment:
Q  14 caaaggcgaggttggggaatggataagctgtggaattgggaatgccattttacaaagcgaaatttagaagacagagagaaagaataaggaatagaattaa 113  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52676269 caaaggtgaggttggggaatggataagctgtggaattgggaatgccattttacaaagcgaaatttagaagacagagagaaagaataaggaatagaattaa 52676170  T
Q  114 tcggagaaagtataggttaattttgtgaatgtgtggttgctactgattccacttagtcatttaccattctcaatcacactctaattcaattatgtgtcta 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  52676169 tcggagaaagtataggttaattttgtgaatgtgtggttgctactgattccacttagtcatttaccattctcaatcactctctaattcaattatgtgtcta 52676070  T
Q  214 aaatactgtgtgactgtcaaaca----gtcacactcgaactcgctaagccactgaaatgaagaattattattacatagatgaaga-tgttggaaatatcc 308  Q
    |||||||||||||||||||||||    |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||    
T  52676069 aaatactgtgtgactgtcaaacagtcagtcacactcgaacttgctaagccactgaaatgaagaattattattgcatagatgaagattgttgcaaatatcc 52675970  T
Q  309 gttgggtttgagctctagccagatttttgtggatgagatgagatatgataataatatagattaagcacgtggttctagatattccacgtgacgtgggaat 408  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52675969 gttgtgtttgagctctagccagatttttgtggatgagatgagatatgataataatatagattaagcacgtggttctagatattccacgtgacgtgggaat 52675870  T
Q  409 ctccatat 416  Q
    ||||||||    
T  52675869 ctccatat 52675862  T

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Target: chr3; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 504 - 605
Target Start/End: Complemental strand, 52675793 - 52675691
Alignment:
Q  504 ataaagcaaatttagtattttgacaagtttgtcatttggcagcttttga-gagccattgccattttaaaatcttctataattggaaatatttccttaatt 602  Q
    |||||||||||||| ||||||| |||||||| |||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52675793 ataaagcaaatttaatattttggcaagtttgccatttgacagcttttaaagagccattgccattttaaaatcttctataattggaaatatttccttaatt 52675694  T
Q  603 gtc 605  Q
    |||    
T  52675693 gtc 52675691  T

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Target: chr3; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 678 - 754
Target Start/End: Complemental strand, 52675615 - 52675539
Alignment:
Q  678 accagctttttaatgatttcctgatttactatgnnnnnnncggtggttctcaatgcaattcaactgaatgaccgctg 754  Q
    ||||||||||||||||||||||||||||| |||       |||||||||||||||||||||||||||||||||||||    
T  52675615 accagctttttaatgatttcctgatttacgatgagaaaaacggtggttctcaatgcaattcaactgaatgaccgctg 52675539  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 490 - 541
Target Start/End: Complemental strand, 1838472 - 1838421
Alignment:
Q  490 atctataaataataataaagcaaatttagtattttgacaagtttgtcatttg 541  Q
    ||||||| |||||||||||||||| ||||||||||| |||||||| ||||||    
T  1838472 atctatagataataataaagcaaacttagtattttggcaagtttgccatttg 1838421  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 498 - 550
Target Start/End: Complemental strand, 473555 - 473503
Alignment:
Q  498 ataataataaagcaaatttagtattttgacaagtttgtcatttggcagctttt 550  Q
    ||||||||||||||| |||||| ||||| ||||||||||||||| || |||||    
T  473555 ataataataaagcaagtttagtgttttggcaagtttgtcatttgtcatctttt 473503  T

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Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 489 - 550
Target Start/End: Complemental strand, 1243062 - 1243001
Alignment:
Q  489 tatctataaataataataaagcaaatttagtattttgacaagtttgtcatttggcagctttt 550  Q
    |||||||| |||||||||||||||| ||| |||||||  |||||||||||||| || |||||    
T  1243062 tatctatagataataataaagcaaacttaatattttggtaagtttgtcatttgtcatctttt 1243001  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 498 - 538
Target Start/End: Complemental strand, 6689945 - 6689905
Alignment:
Q  498 ataataataaagcaaatttagtattttgacaagtttgtcat 538  Q
    |||||||||||||||| ||||||||||| ||||||||||||    
T  6689945 ataataataaagcaaacttagtattttggcaagtttgtcat 6689905  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 490 - 546
Target Start/End: Complemental strand, 1824642 - 1824586
Alignment:
Q  490 atctataaataataataaagcaaatttagtattttgacaagtttgtcatttggcagc 546  Q
    ||||||| |||||||||||||||| | ||||||||||||||| || |||||| ||||    
T  1824642 atctatagataataataaagcaaactaagtattttgacaagtatgccatttgtcagc 1824586  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 490 - 541
Target Start/End: Original strand, 41521003 - 41521054
Alignment:
Q  490 atctataaataataataaagcaaatttagtattttgacaagtttgtcatttg 541  Q
    ||||||| |||||||||||| || |||||||||||| |||||||| ||||||    
T  41521003 atctatagataataataaaggaagtttagtattttggcaagtttgccatttg 41521054  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 501 - 555
Target Start/End: Complemental strand, 23920857 - 23920803
Alignment:
Q  501 ataataaagcaaatttagtattttgacaagtttgtcatttggcagcttttgagag 555  Q
    ||||||||||||| ||||||||||| |||||||| |||||| || ||||| ||||    
T  23920857 ataataaagcaaacttagtattttggcaagtttgccatttgtcatcttttaagag 23920803  T

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