View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11582_high_31 (Length: 339)
Name: NF11582_high_31
Description: NF11582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11582_high_31 |
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Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-169; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 19 - 330
Target Start/End: Complemental strand, 31185346 - 31185035
Alignment:
| Q |
19 |
ctaatggtactgattattggattgtgaagaattcatggggcactgtgtggggtgagaaagggtacataaggatgcaaagaggtatagctgctaaggaagg |
118 |
Q |
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| T |
31185346 |
ctaatggtactgattattggattgtgaagaattcatggggcactgtgtggggtgaaaaagggtacataaggatgcaaagaggtatagctgctaaggaagg |
31185247 |
T |
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| Q |
119 |
cttgtgtggtattgccatggattcttcttatccaactgcttaaattatccagttatgtaacttgtgtctcaagcttgtatttttctttatcttgtttgaa |
218 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31185246 |
cttatgtggtattgccatggattcttcttatccaactgcttaaattatccagttatgtaacttgtgtctcaagcttgtatttttctttatcttgtttgaa |
31185147 |
T |
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| Q |
219 |
catatggctacatgaatgtaaacttatattttagaaacattaaatatacacttatacaaaattaatacaactatgttatttgaacatcaaaatacgttgt |
318 |
Q |
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| T |
31185146 |
catatggctacatgaatttaaacttatattttagaaacattaaatatacacttatacaaaattaatacaactatgttatttgaacatcaaaatacgttgt |
31185047 |
T |
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| Q |
319 |
atatgttcatct |
330 |
Q |
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|||||||||||| |
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| T |
31185046 |
atatgttcatct |
31185035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 19 - 201
Target Start/End: Complemental strand, 31194173 - 31193991
Alignment:
| Q |
19 |
ctaatggtactgattattggattgtgaagaattcatggggcactgtgtggggtgagaaagggtacataaggatgcaaagaggtatagctgctaaggaagg |
118 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
31194173 |
ctaatgggactgattattggattgtgaagaattcatggggcactgtgtggggtgagaaagggtacataaggatgcaaagaggtatagctgataaggaagg |
31194074 |
T |
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| Q |
119 |
cttgtgtggtattgccatggattcttcttatccaactgcttaaattatccagttatgtaacttgtgtctcaagcttgtatttt |
201 |
Q |
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| T |
31194073 |
cttatgtggtattgcaatggattcttcttatccaactgcttaacctgttgaattatgtaacttgtgtctcaagcttgtatttt |
31193991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 26 - 85
Target Start/End: Complemental strand, 31176520 - 31176461
Alignment:
| Q |
26 |
tactgattattggattgtgaagaattcatggggcactgtgtggggtgagaaagggtacat |
85 |
Q |
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|||||| |||||| | || || ||||||||||| |||| ||||||||||||||||||||| |
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| T |
31176520 |
tactgagtattggttagtaaaaaattcatggggtactgggtggggtgagaaagggtacat |
31176461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 97
Target Start/End: Original strand, 31727566 - 31727636
Alignment:
| Q |
27 |
actgattattggattgtgaagaattcatggggcactgtgtggggtgagaaagggtacataaggatgcaaag |
97 |
Q |
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| T |
31727566 |
actgagtattggttggtgaagaattcatggggaactcaatggggtgaagaagggtacattaggatgcaaag |
31727636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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