View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11582_high_33 (Length: 327)
Name: NF11582_high_33
Description: NF11582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11582_high_33 |
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Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 42969377 - 42969692
Alignment:
| Q |
1 |
ccataacttagcattaatcaatttcacattcaaaaaatgttattttgtaactttagtagtagtaatatatttattgaaaattgagctagtaacttaaact |
100 |
Q |
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| T |
42969377 |
ccataacttagcattaatcaatttcacattcaaaaaatgttattttgtaactttagtagtagtaatatatttattgaaaattgagctagtaacttaaact |
42969476 |
T |
|
| Q |
101 |
aattataatttgtacctgtattggagacatatcattctgcatataatccaaaggggtccaagaggcaagtttgtcacaagttttagaccctaaaatacaa |
200 |
Q |
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| T |
42969477 |
aattataatttgtacctgtattggagacatatcattctgcatgtaatccaaaggggtccaagaggcaagtttgtcacaagttttagaccctaaaatacaa |
42969576 |
T |
|
| Q |
201 |
ttctttatagtattccaataacgaggatcttgtattcttttcttcaaccaaggtgaataatctgttagatgatactcactataagatctaccaggcactt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
42969577 |
ttctttatagtattccaataacgaggatcttgtattcttttcttcaaccaaggtgaataatctgtaagatgatactcactataagatctaccaggcactt |
42969676 |
T |
|
| Q |
301 |
ctacaccaccaccttt |
316 |
Q |
| |
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|||||||||||||||| |
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| T |
42969677 |
ctacaccaccaccttt |
42969692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 113 - 315
Target Start/End: Original strand, 10679138 - 10679340
Alignment:
| Q |
113 |
tacctgtattggagacatatcattctgcatataatccaaaggggtccaagaggcaagtttgtcacaagttttagaccctaaaatacaattctttatagta |
212 |
Q |
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|||||| |||||||||| ||| | ||||||||||| | || ||||||||| |||||||| |||||| |||||||| | ||||||| |||| |||||| |
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| T |
10679138 |
tacctgaattggagacaaatccctttgcatataatcaagagaggtccaagaagcaagttttgaacaagtattagaccccataatacaactcttaatagta |
10679237 |
T |
|
| Q |
213 |
ttccaataacgaggatcttgtattcttttcttcaaccaaggtgaataatctgttagatgatactcactataagatctaccaggcacttctacaccaccac |
312 |
Q |
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| T |
10679238 |
ctccaatattgatgatccttaatccttttcttcaaccaaggtgaataattttgaagatgatactccatataagttctaccaggcacttcaacacccccac |
10679337 |
T |
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| Q |
313 |
ctt |
315 |
Q |
| |
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||| |
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| T |
10679338 |
ctt |
10679340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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