View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11582_high_36 (Length: 293)
Name: NF11582_high_36
Description: NF11582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11582_high_36 |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 42 - 277
Target Start/End: Original strand, 4307402 - 4307637
Alignment:
| Q |
42 |
agatacacttatttatactatgctatgtacctcacaagcttaactatagttagttgtttaactataactaactattgtaacttccataactgtcaaaaca |
141 |
Q |
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| T |
4307402 |
agatacacttatttatactatgctatgtacctcacaagcttaactatagttagttgtttaactataactaactattgtaacttccataactgtcaaaaga |
4307501 |
T |
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| Q |
142 |
gttagttagttactagactctgcaattacttgttacacaagcaattgtcttaagctaatatctaatcaaactttaacacagatactcattttctaaactc |
241 |
Q |
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| T |
4307502 |
gttagttagttactagactctgcaattacttgttacacaagtaattgtcttaagctaatatctaatcaaactttaacacagatactcattttctacactc |
4307601 |
T |
|
| Q |
242 |
agaatcatccttcccaactcacccaccatctctgat |
277 |
Q |
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| T |
4307602 |
agaatcatcctccccaactcacccaccatctctgat |
4307637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 144 - 207
Target Start/End: Original strand, 27031552 - 27031614
Alignment:
| Q |
144 |
tagttagttactagactctgcaattacttgttacacaagcaattgtcttaagctaatatctaat |
207 |
Q |
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| T |
27031552 |
tagttagttactagactgtgcaattacttgttacacaagtaattgtc-taagttaatatctaat |
27031614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 4307425 - 4307381
Alignment:
| Q |
1 |
agcatagtataaataagtgtatctcagaattgtaaagactaagat |
45 |
Q |
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| T |
4307425 |
agcatagtataaataagtgtatctcagtattgtaaagactaagat |
4307381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 219
Target Start/End: Complemental strand, 27073356 - 27073291
Alignment:
| Q |
153 |
actagactctgcaattacttgttacacaagcaattgtcttaagctaatatctaatcaaactttaaca |
219 |
Q |
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| T |
27073356 |
actagactgtgcaattacttgttacacaagtaattgtc-taagttaatatctaattacactttaaca |
27073291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 190
Target Start/End: Original strand, 26991641 - 26991687
Alignment:
| Q |
144 |
tagttagttactagactctgcaattacttgttacacaagcaattgtc |
190 |
Q |
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| T |
26991641 |
tagttagttactagactgtgcaattacttgttagacaggtaattgtc |
26991687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 46 - 153
Target Start/End: Complemental strand, 33306355 - 33306248
Alignment:
| Q |
46 |
acacttatttatactatgctatgtacctcacaagcttaactatagttagttgtttaactataactaactattgtaacttccataactgtcaaaacagtta |
145 |
Q |
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| T |
33306355 |
acacttatttatactattctaagtacccaacacgcttaactatagttagttatttaactataaccaattattataacatccataactgtcaagacagtta |
33306256 |
T |
|
| Q |
146 |
gttagtta |
153 |
Q |
| |
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|||||||| |
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|
| T |
33306255 |
gttagtta |
33306248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 77 - 152
Target Start/End: Original strand, 18096364 - 18096436
Alignment:
| Q |
77 |
aagcttaactatagttagttgtttaactataactaactattgtaacttccataactgtcaaaacagttagttagtt |
152 |
Q |
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| T |
18096364 |
aagcttaactatagttagttatttaactataactaac---tgtaacttccataacagtcaaaacagttagttagtt |
18096436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 190
Target Start/End: Original strand, 34693899 - 34693945
Alignment:
| Q |
144 |
tagttagttactagactctgcaattacttgttacacaagcaattgtc |
190 |
Q |
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|
||||||||||||||||| ||||||||||||||| ||| | ||||||| |
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| T |
34693899 |
tagttagttactagactgtgcaattacttgttagacaggtaattgtc |
34693945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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