View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11582_high_38 (Length: 290)
Name: NF11582_high_38
Description: NF11582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11582_high_38 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 39230146 - 39230424
Alignment:
| Q |
1 |
aactctgatttgataaccatgttccaaagttttacagtatatcacattaataagattcttatcatgtcaattttgtttgacacatgaaaataatttttga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
39230146 |
aactctgatttgataaccatgttccaaagttttacagtatatcacattaataagattcttatcatgtcaattttgtatgacacatgaaaataatttttga |
39230245 |
T |
|
| Q |
101 |
ttgcatcactcttgtcttttaggctaataattagaccctaatcccaattttaaatgactaattagaatttgagatatgctgatcaccaaaccattttgta |
200 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39230246 |
ttgcatcactcttgt-ttttaggctaataattagaccctaatcccaattttaaatgactaattagaatttgagatatgctgatcaccaaaccattttgta |
39230344 |
T |
|
| Q |
201 |
taattttcaacgaaaaatcgtactatcatactctcttttttgacgactcctctcatcgacactttttaatatgtcctatg |
280 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
39230345 |
taattttcaacgaaaaatcgtactatcatactcttttttttgacgactcctcttattgacactttttaatatgtcctatg |
39230424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 25549481 - 25549754
Alignment:
| Q |
1 |
aactctgatttgataaccatgttccaaagttttacagtatatcacattaataagattcttatcatgtcaattttgtttgacacatgaaaataatttttga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| | |
|
|
| T |
25549481 |
aactctgatttgataaccatgttccaaagttttacagtatatcacattaataagattcttatcatgtcaattttgtatgacacataaaaataatttttca |
25549580 |
T |
|
| Q |
101 |
ttgcatcactcttgtcttttaggctaataattagaccctaatcccaattttaaatgactaattagaatttgagatatgctgatcaccaaaccattttgta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25549581 |
ttgcatcactcttgtcttttaggctaataattagatcctaatcccaattttaaacgactaattagaatttgagatatgctgatcaccaaaccattttgta |
25549680 |
T |
|
| Q |
201 |
taattttcaacgaaaaatcgtactatcatactctcttttttgacgactcctctcatcgacactttttaatatgt |
274 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
25549681 |
taattttcaacgaaaaatcatactatcatactctcttttttgacgactcctctctttaacactttttaatatgt |
25549754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University