View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11582_high_46 (Length: 256)

Name: NF11582_high_46
Description: NF11582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11582_high_46
NF11582_high_46
[»] chr4 (5 HSPs)
chr4 (18-137)||(53118539-53118664)
chr4 (146-198)||(53118803-53118855)
chr4 (146-200)||(865442-865497)
chr4 (214-246)||(4730661-4730693)
chr4 (214-246)||(24573822-24573854)
[»] chr2 (2 HSPs)
chr2 (214-246)||(28783900-28783932)
chr2 (214-242)||(19281822-19281850)
[»] chr8 (2 HSPs)
chr8 (214-245)||(42093521-42093552)
chr8 (147-199)||(41723974-41724027)
[»] chr5 (3 HSPs)
chr5 (214-245)||(32694705-32694736)
chr5 (214-245)||(39084245-39084276)
chr5 (214-245)||(40366354-40366385)
[»] chr3 (4 HSPs)
chr3 (146-200)||(25067472-25067527)
chr3 (214-245)||(54281624-54281655)
chr3 (146-199)||(43656194-43656246)
chr3 (214-242)||(21102698-21102726)
[»] chr1 (4 HSPs)
chr1 (214-245)||(30856189-30856220)
chr1 (214-245)||(39840609-39840640)
chr1 (214-245)||(41147210-41147241)
chr1 (147-199)||(46728694-46728747)
[»] chr7 (2 HSPs)
chr7 (146-199)||(789325-789379)
chr7 (214-242)||(8408087-8408115)


Alignment Details
Target: chr4 (Bit Score: 87; Significance: 8e-42; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 18 - 137
Target Start/End: Original strand, 53118539 - 53118664
Alignment:
Q  18 ttcggaatattaagtcctaccatactctctatgtaagaaatgattttatttctcgattatgcgggatgcgtga------tgttatttattaaatgaaaaa 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||      | ||||||||  |||||||||    
T  53118539 ttcggaatattaagtcctaccatactctctatgtaagaaatgattttatttctcgattatgagggatgcgtgatattattattatttatagaatgaaaaa 53118638  T
Q  112 gaataaaggaaacataaaatcccttc 137  Q
    ||||||||||||||||||||||||||    
T  53118639 gaataaaggaaacataaaatcccttc 53118664  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 146 - 198
Target Start/End: Original strand, 53118803 - 53118855
Alignment:
Q  146 atttgggtcagttttaattttcatcctatacaaaaaaaactttgaaatacatc 198  Q
    ||||||||||||||||||||||||| | |||||||||||||||||||||||||    
T  53118803 atttgggtcagttttaattttcatcttgtacaaaaaaaactttgaaatacatc 53118855  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 200
Target Start/End: Original strand, 865442 - 865497
Alignment:
Q  146 atttgggtcagttttaattttcatcc-tatacaaaaaaaactttgaaatacatcct 200  Q
    ||||||||||||||| |||||| ||| | || ||||||||||||||||||||||||    
T  865442 atttgggtcagttttgattttcgtccctgtaaaaaaaaaactttgaaatacatcct 865497  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 246
Target Start/End: Original strand, 4730661 - 4730693
Alignment:
Q  214 ttgtttgaaaaaggtccctgaccccacttcatc 246  Q
    |||||||||||||||| ||||||||||||||||    
T  4730661 ttgtttgaaaaaggtctctgaccccacttcatc 4730693  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 246
Target Start/End: Original strand, 24573822 - 24573854
Alignment:
Q  214 ttgtttgaaaaaggtccctgaccccacttcatc 246  Q
    |||||||||||||||||||| ||||||||||||    
T  24573822 ttgtttgaaaaaggtccctggccccacttcatc 24573854  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 214 - 246
Target Start/End: Original strand, 28783900 - 28783932
Alignment:
Q  214 ttgtttgaaaaaggtccctgaccccacttcatc 246  Q
    |||||||||||||||||||||||||||||||||    
T  28783900 ttgtttgaaaaaggtccctgaccccacttcatc 28783932  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 242
Target Start/End: Original strand, 19281822 - 19281850
Alignment:
Q  214 ttgtttgaaaaaggtccctgaccccactt 242  Q
    |||||||||||||||||||||||||||||    
T  19281822 ttgtttgaaaaaggtccctgaccccactt 19281850  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 214 - 245
Target Start/End: Original strand, 42093521 - 42093552
Alignment:
Q  214 ttgtttgaaaaaggtccctgaccccacttcat 245  Q
    ||||||||||||||||||||||||||||||||    
T  42093521 ttgtttgaaaaaggtccctgaccccacttcat 42093552  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 147 - 199
Target Start/End: Complemental strand, 41724027 - 41723974
Alignment:
Q  147 tttgggtcagttttaattttcatc-ctatacaaaaaaaactttgaaatacatcc 199  Q
    |||| ||||||||| ||||||||| || || |||||||||||||||||||||||    
T  41724027 tttgagtcagttttgattttcatctctgtaaaaaaaaaactttgaaatacatcc 41723974  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 214 - 245
Target Start/End: Complemental strand, 32694736 - 32694705
Alignment:
Q  214 ttgtttgaaaaaggtccctgaccccacttcat 245  Q
    ||||||||||||||||||||||||||||||||    
T  32694736 ttgtttgaaaaaggtccctgaccccacttcat 32694705  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 214 - 245
Target Start/End: Complemental strand, 39084276 - 39084245
Alignment:
Q  214 ttgtttgaaaaaggtccctgaccccacttcat 245  Q
    ||||||||||||||||||||||||||||||||    
T  39084276 ttgtttgaaaaaggtccctgaccccacttcat 39084245  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 214 - 245
Target Start/End: Original strand, 40366354 - 40366385
Alignment:
Q  214 ttgtttgaaaaaggtccctgaccccacttcat 245  Q
    ||||||||||||||||||||||||||||||||    
T  40366354 ttgtttgaaaaaggtccctgaccccacttcat 40366385  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 200
Target Start/End: Original strand, 25067472 - 25067527
Alignment:
Q  146 atttgggtcagttttaattttcatc-ctatacaaaaaaaactttgaaatacatcct 200  Q
    |||||||||||||||||||||| || ||||  |||||||||| |||||||||||||    
T  25067472 atttgggtcagttttaattttcgtctctatgaaaaaaaaactctgaaatacatcct 25067527  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 214 - 245
Target Start/End: Complemental strand, 54281655 - 54281624
Alignment:
Q  214 ttgtttgaaaaaggtccctgaccccacttcat 245  Q
    ||||||||||||||||||||||||||||||||    
T  54281655 ttgtttgaaaaaggtccctgaccccacttcat 54281624  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 146 - 199
Target Start/End: Complemental strand, 43656246 - 43656194
Alignment:
Q  146 atttgggtcagttttaattttcatcctatacaaaaaaaactttgaaatacatcc 199  Q
    ||||||| ||||||| |||||| |||| || |||||||||||||||||||||||    
T  43656246 atttgggacagttttgattttcgtcctgta-aaaaaaaactttgaaatacatcc 43656194  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 242
Target Start/End: Original strand, 21102698 - 21102726
Alignment:
Q  214 ttgtttgaaaaaggtccctgaccccactt 242  Q
    |||||||||||||||||||||||||||||    
T  21102698 ttgtttgaaaaaggtccctgaccccactt 21102726  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 214 - 245
Target Start/End: Original strand, 30856189 - 30856220
Alignment:
Q  214 ttgtttgaaaaaggtccctgaccccacttcat 245  Q
    ||||||||||||||||||||||||||||||||    
T  30856189 ttgtttgaaaaaggtccctgaccccacttcat 30856220  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 214 - 245
Target Start/End: Original strand, 39840609 - 39840640
Alignment:
Q  214 ttgtttgaaaaaggtccctgaccccacttcat 245  Q
    ||||||||||||||||||||||||||||||||    
T  39840609 ttgtttgaaaaaggtccctgaccccacttcat 39840640  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 214 - 245
Target Start/End: Complemental strand, 41147241 - 41147210
Alignment:
Q  214 ttgtttgaaaaaggtccctgaccccacttcat 245  Q
    ||||||||||||||||||||||||||||||||    
T  41147241 ttgtttgaaaaaggtccctgaccccacttcat 41147210  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 147 - 199
Target Start/End: Complemental strand, 46728747 - 46728694
Alignment:
Q  147 tttgggtcagttttaattttcatcc-tatacaaaaaaaactttgaaatacatcc 199  Q
    |||||||||||||| |||||| ||| | || |||||||||||||||||||||||    
T  46728747 tttgggtcagttttgattttcgtccctgtataaaaaaaactttgaaatacatcc 46728694  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 199
Target Start/End: Original strand, 789325 - 789379
Alignment:
Q  146 atttgggtcagttttaattttcat-cctatacaaaaaaaactttgaaatacatcc 199  Q
    ||||||||||||||| |||||||| ||| || |||||||||||||||| ||||||    
T  789325 atttgggtcagttttgattttcatccctctaaaaaaaaaactttgaaaaacatcc 789379  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 242
Target Start/End: Original strand, 8408087 - 8408115
Alignment:
Q  214 ttgtttgaaaaaggtccctgaccccactt 242  Q
    |||||||||||||||||||||||||||||    
T  8408087 ttgtttgaaaaaggtccctgaccccactt 8408115  T

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