View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11582_high_50 (Length: 249)

Name: NF11582_high_50
Description: NF11582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11582_high_50
NF11582_high_50
[»] chr5 (4 HSPs)
chr5 (152-245)||(25359184-25359277)
chr5 (1-90)||(25359021-25359109)
chr5 (152-196)||(10399158-10399202)
chr5 (12-57)||(23227215-23227260)
[»] chr4 (6 HSPs)
chr4 (152-245)||(23619599-23619692)
chr4 (12-92)||(14619799-14619879)
chr4 (153-204)||(23120671-23120721)
chr4 (4-92)||(23120505-23120593)
chr4 (152-196)||(3394712-3394756)
chr4 (152-197)||(37694398-37694443)
[»] chr3 (2 HSPs)
chr3 (153-220)||(12782516-12782583)
chr3 (4-57)||(24398197-24398250)
[»] chr1 (7 HSPs)
chr1 (152-220)||(22529303-22529371)
chr1 (196-245)||(22529398-22529447)
chr1 (4-89)||(49235798-49235883)
chr1 (167-220)||(49235637-49235690)
chr1 (152-196)||(3782062-3782106)
chr1 (155-198)||(30858657-30858700)
chr1 (12-56)||(27573789-27573833)
[»] scaffold0005 (1 HSPs)
scaffold0005 (12-92)||(197498-197578)
[»] chr7 (8 HSPs)
chr7 (12-92)||(12084512-12084592)
chr7 (12-57)||(3746847-3746892)
chr7 (11-60)||(11827793-11827842)
chr7 (12-60)||(3746812-3746860)
chr7 (12-60)||(7411495-7411543)
chr7 (152-198)||(33803075-33803121)
chr7 (177-245)||(28068432-28068498)
chr7 (41-73)||(29714329-29714361)
[»] chr2 (4 HSPs)
chr2 (12-71)||(26227677-26227736)
chr2 (152-196)||(20149478-20149522)
chr2 (152-194)||(2195057-2195099)
chr2 (42-79)||(18880335-18880372)
[»] chr6 (2 HSPs)
chr6 (152-196)||(17399184-17399228)
chr6 (152-196)||(23912121-23912165)
[»] chr8 (3 HSPs)
chr8 (157-198)||(2766736-2766777)
chr8 (167-196)||(3964170-3964199)
chr8 (11-59)||(12503394-12503442)


Alignment Details
Target: chr5 (Bit Score: 82; Significance: 8e-39; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 152 - 245
Target Start/End: Original strand, 25359184 - 25359277
Alignment:
Q  152 gacctcattaagtcttatgttaccttaaaccacctataaataccctcctcctcttcactatttctcacaccatttctcacattctctgctcctc 245  Q
    |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  25359184 gacctcattaagtcctatgttaccttaaaccacctataaataccttcctcctcttcactatttctcacaccatttctcacattctctcctcctc 25359277  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 25359021 - 25359109
Alignment:
Q  1 atacatgcaatgtgagttaactctcgcacctttggctggtggcgtgagttaactcacgcaggttggccggttgttcatgcactaagaaca 90  Q
    ||||||| || ||||||||||||  ||||||||||| ||||||| | |||||||||| ||||||||||||| |||||||||| |||||||    
T  25359021 atacatgtaacgtgagttaactcatgcacctttggccggtggcgcg-gttaactcacacaggttggccggtagttcatgcaccaagaaca 25359109  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 152 - 196
Target Start/End: Complemental strand, 10399202 - 10399158
Alignment:
Q  152 gacctcattaagtcttatgttaccttaaaccacctataaataccc 196  Q
    |||||||||||||  ||||||||||||||||||||||||||||||    
T  10399202 gacctcattaagtgctatgttaccttaaaccacctataaataccc 10399158  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 23227215 - 23227260
Alignment:
Q  12 gtgagttaactctcgcacctttggctggtggcgtgagttaactcac 57  Q
    |||||||||||| |||||||||| | |||||||||| |||||||||    
T  23227215 gtgagttaactcacgcacctttgaccggtggcgtgacttaactcac 23227260  T

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Target: chr4 (Bit Score: 82; Significance: 8e-39; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 152 - 245
Target Start/End: Original strand, 23619599 - 23619692
Alignment:
Q  152 gacctcattaagtcttatgttaccttaaaccacctataaataccctcctcctcttcactatttctcacaccatttctcacattctctgctcctc 245  Q
    |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  23619599 gacctcattaagtcctatgttaccttaaaccacctataaataccatcctcctcttcactatttctcacaccatttctcacattctctcctcctc 23619692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 14619879 - 14619799
Alignment:
Q  12 gtgagttaactctcgcacctttggctggtggcgtgagttaactcacgcaggttggccggttgttcatgcactaagaacacg 92  Q
    |||| ||||||| |||| ||||||  ||| |||||||||||||||||||||||||||||| ||||||| || |||||||||    
T  14619879 gtgacttaactcacgcatctttggtcggttgcgtgagttaactcacgcaggttggccggtggttcatgaacaaagaacacg 14619799  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 153 - 204
Target Start/End: Original strand, 23120671 - 23120721
Alignment:
Q  153 acctcattaagtcttatgttaccttaaaccacctataaataccctcctcctc 204  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  23120671 acctcattaagtcgtatgttaccttaaacca-ctataaataccctcctcctc 23120721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 92
Target Start/End: Original strand, 23120505 - 23120593
Alignment:
Q  4 catgcaatgtgagttaactctcgcacctttggctggtggcgtgagttaactcacgcaggttggccggttgttcatgcactaagaacacg 92  Q
    ||||||| |||||||||||| || |  |||||| |||||||||| |||||| || ||||||||| ||| ||||||| || |||||||||    
T  23120505 catgcaacgtgagttaactcacgtagttttggccggtggcgtgatttaacttacacaggttggcaggtagttcatgtaccaagaacacg 23120593  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 196
Target Start/End: Complemental strand, 3394756 - 3394712
Alignment:
Q  152 gacctcattaagtcttatgttaccttaaaccacctataaataccc 196  Q
    ||||||||||| |  ||||||||||||||||||||||||||||||    
T  3394756 gacctcattaaatgctatgttaccttaaaccacctataaataccc 3394712  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 197
Target Start/End: Complemental strand, 37694443 - 37694398
Alignment:
Q  152 gacctcattaagtcttatgttaccttaaaccacctataaataccct 197  Q
    |||||||||||||  |||| |||||||||||||||||||| |||||    
T  37694443 gacctcattaagtgatatgctaccttaaaccacctataaaaaccct 37694398  T

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Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 153 - 220
Target Start/End: Complemental strand, 12782583 - 12782516
Alignment:
Q  153 acctcattaagtcttatgttaccttaaaccacctataaataccctcctcctcttcactatttctcaca 220  Q
    ||||||||||||  ||| |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  12782583 acctcattaagtgctatattaccttaaaccacctataaataccctcttcctcttcactatttctcaca 12782516  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 24398197 - 24398250
Alignment:
Q  4 catgcaatgtgagttaactctcgcacctttggctggtggcgtgagttaactcac 57  Q
    ||||||| |||||||||||| |||||||||||  |||||| |||||||||||||    
T  24398197 catgcaacgtgagttaactcacgcacctttggtcggtggcatgagttaactcac 24398250  T

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Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 152 - 220
Target Start/End: Original strand, 22529303 - 22529371
Alignment:
Q  152 gacctcattaagtcttatgttaccttaaaccacctataaataccctcctcctcttcactatttctcaca 220  Q
    ||||||||||| || || ||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  22529303 gacctcattaaatcctaggttaccttaaaccacctataaatattctcctcctcttcactatttctcaca 22529371  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 196 - 245
Target Start/End: Original strand, 22529398 - 22529447
Alignment:
Q  196 ctcctcctcttcactatttctcacaccatttctcacattctctgctcctc 245  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  22529398 ctcctcctcttcactatttctcacaccatttctcacattctctcctcctc 22529447  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 89
Target Start/End: Complemental strand, 49235883 - 49235798
Alignment:
Q  4 catgcaatgtgagttaactctcgcacctttggctggtggcgtgagttaactcacgcaggttggccggttgttcatgcactaagaac 89  Q
    ||||||| |||||||||||| | |||||||||| | | |||||||||||||| ||||| ||||||||| |||||||||| ||||||    
T  49235883 catgcaacgtgagttaactcacacacctttggccgatagcgtgagttaactcgcgcagattggccggtagttcatgcaccaagaac 49235798  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 167 - 220
Target Start/End: Complemental strand, 49235690 - 49235637
Alignment:
Q  167 tatgttaccttaaaccacctataaataccctcctcctcttcactatttctcaca 220  Q
    ||||||||| ||||||| ||||||||| |||| |||||||||||||||||||||    
T  49235690 tatgttaccctaaaccatctataaatatcctcttcctcttcactatttctcaca 49235637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 152 - 196
Target Start/End: Original strand, 3782062 - 3782106
Alignment:
Q  152 gacctcattaagtcttatgttaccttaaaccacctataaataccc 196  Q
    ||||||||||||| ||||||||||||||| |||||||||||||||    
T  3782062 gacctcattaagtgttatgttaccttaaatcacctataaataccc 3782106  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 198
Target Start/End: Original strand, 30858657 - 30858700
Alignment:
Q  155 ctcattaagtcttatgttaccttaaaccacctataaataccctc 198  Q
    ||||||||||  |||| |||||||||||||||||||||||||||    
T  30858657 ctcattaagtgctatgctaccttaaaccacctataaataccctc 30858700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 27573789 - 27573833
Alignment:
Q  12 gtgagttaactctcgcacctttggctggtggcgtgagttaactca 56  Q
    |||||||||||| ||||| |||| | |||||||||||||||||||    
T  27573789 gtgagttaactcacgcacatttgaccggtggcgtgagttaactca 27573833  T

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Target: scaffold0005 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 197498 - 197578
Alignment:
Q  12 gtgagttaactctcgcacctttggctggtggcgtgagttaactcacgcaggttggccggttgttcatgcactaagaacacg 92  Q
    |||| ||||||| |||| ||||||  ||| |||||||||||||||||||||||||||||| ||||||| || |||||||||    
T  197498 gtgacttaactcacgcatctttggtcggttgcgtgagttaactcacgcaggttggccggtggttcatgaacaaagaacacg 197578  T

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Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 12084592 - 12084512
Alignment:
Q  12 gtgagttaactctcgcacctttggctggtggcgtgagttaactcacgcaggttggccggttgttcatgcactaagaacacg 92  Q
    ||||||||| ||  ||||||||||| |||||||||||||||||||||||  |||||||||  ||||||||| |||||||||    
T  12084592 gtgagttaagtcatgcacctttggccggtggcgtgagttaactcacgcaacttggccggtgattcatgcaccaagaacacg 12084512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 3746892 - 3746847
Alignment:
Q  12 gtgagttaactctcgcacctttggctggtggcgtgagttaactcac 57  Q
    |||||||||||| ||||||||||| ||||||||||| |||||||||    
T  3746892 gtgagttaactcacgcacctttggatggtggcgtgacttaactcac 3746847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 11827842 - 11827793
Alignment:
Q  11 tgtgagttaactctcgcacctttggctggtggcgtgagttaactcacgca 60  Q
    ||||| |||| || |||||||||||| |||||||||||||||||||||||    
T  11827842 tgtgacttaagtcacgcacctttggccggtggcgtgagttaactcacgca 11827793  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 3746860 - 3746812
Alignment:
Q  12 gtgagttaactctcgcacctttggctggtggcgtgagttaactcacgca 60  Q
    |||| ||||||| | |||||||||| |||||||||||||||||||||||    
T  3746860 gtgacttaactcacacacctttggccggtggcgtgagttaactcacgca 3746812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 7411495 - 7411543
Alignment:
Q  12 gtgagttaactctcgcacctttggctggtggcgtgagttaactcacgca 60  Q
    |||||||||||| |||||||||| ||||||| |||||||||||| ||||    
T  7411495 gtgagttaactcacgcacctttgcctggtggagtgagttaactcgcgca 7411543  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 198
Target Start/End: Original strand, 33803075 - 33803121
Alignment:
Q  152 gacctcattaagtcttatgttaccttaaaccacctataaataccctc 198  Q
    |||||||||||||  |||| |||||||||||| ||||||||||||||    
T  33803075 gacctcattaagtgctatggtaccttaaaccatctataaataccctc 33803121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 245
Target Start/End: Complemental strand, 28068498 - 28068432
Alignment:
Q  177 taaaccacctataaataccctcctcctcttcactatttctcacaccatttctcacattctctgctcctc 245  Q
    ||||| ||||||||||||||| |    ||||||||||||||||||  ||||||||||||||| ||||||    
T  28068498 taaacaacctataaatacccttccaaccttcactatttctcacac--tttctcacattctctcctcctc 28068432  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 73
Target Start/End: Original strand, 29714329 - 29714361
Alignment:
Q  41 ggcgtgagttaactcacgcaggttggccggttg 73  Q
    |||| ||||||||||||||||||||||||||||    
T  29714329 ggcgcgagttaactcacgcaggttggccggttg 29714361  T

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Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 71
Target Start/End: Complemental strand, 26227736 - 26227677
Alignment:
Q  12 gtgagttaactctcgcacctttggctggtggcgtgagttaactcacgcaggttggccggt 71  Q
    |||| ||||||| |||||||||||| | ||||||||||||||||||||||||||||||||    
T  26227736 gtgacttaactcgcgcacctttggccgatggcgtgagttaactcacgcaggttggccggt 26227677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 152 - 196
Target Start/End: Complemental strand, 20149522 - 20149478
Alignment:
Q  152 gacctcattaagtcttatgttaccttaaaccacctataaataccc 196  Q
    |||||||||||||  ||||||||||||||||||||||||||||||    
T  20149522 gacctcattaagtgctatgttaccttaaaccacctataaataccc 20149478  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 194
Target Start/End: Complemental strand, 2195099 - 2195057
Alignment:
Q  152 gacctcattaagtcttatgttaccttaaaccacctataaatac 194  Q
    ||||||||||||| ||||| ||| |||||||||||||||||||    
T  2195099 gacctcattaagtgttatgctactttaaaccacctataaatac 2195057  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 79
Target Start/End: Complemental strand, 18880372 - 18880335
Alignment:
Q  42 gcgtgagttaactcacgcaggttggccggttgttcatg 79  Q
    ||||||||||||||| |||||||||||||| |||||||    
T  18880372 gcgtgagttaactcaagcaggttggccggtagttcatg 18880335  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 152 - 196
Target Start/End: Original strand, 17399184 - 17399228
Alignment:
Q  152 gacctcattaagtcttatgttaccttaaaccacctataaataccc 196  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||    
T  17399184 gacctcattaagtgttatgttacattaaaccacctataaataccc 17399228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 152 - 196
Target Start/End: Complemental strand, 23912165 - 23912121
Alignment:
Q  152 gacctcattaagtcttatgttaccttaaaccacctataaataccc 196  Q
    |||||||||||||  ||||||||||||||||||||||||||||||    
T  23912165 gacctcattaagtgctatgttaccttaaaccacctataaataccc 23912121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 198
Target Start/End: Complemental strand, 2766777 - 2766736
Alignment:
Q  157 cattaagtcttatgttaccttaaaccacctataaataccctc 198  Q
    ||||||||  |||| |||||||||||||||||||||||||||    
T  2766777 cattaagtgctatgctaccttaaaccacctataaataccctc 2766736  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 196
Target Start/End: Original strand, 3964170 - 3964199
Alignment:
Q  167 tatgttaccttaaaccacctataaataccc 196  Q
    ||||||||||||||||||||||||||||||    
T  3964170 tatgttaccttaaaccacctataaataccc 3964199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 12503394 - 12503442
Alignment:
Q  11 tgtgagttaactctcgcacctttggctggtggcgtgagttaactcacgc 59  Q
    ||||||||||||| ||| |||||||| | |||||||| |||||||||||    
T  12503394 tgtgagttaactcacgctcctttggccgttggcgtgacttaactcacgc 12503442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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