View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11582_high_51 (Length: 247)

Name: NF11582_high_51
Description: NF11582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11582_high_51
NF11582_high_51
[»] chr1 (2 HSPs)
chr1 (18-228)||(13833664-13833874)
chr1 (148-193)||(47900847-47900892)
[»] chr8 (1 HSPs)
chr8 (148-193)||(42525202-42525246)
[»] chr6 (1 HSPs)
chr6 (148-181)||(28870943-28870976)
[»] chr4 (1 HSPs)
chr4 (148-181)||(9354009-9354042)
[»] chr7 (1 HSPs)
chr7 (149-181)||(25136756-25136788)


Alignment Details
Target: chr1 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 18 - 228
Target Start/End: Original strand, 13833664 - 13833874
Alignment:
Q  18 aggttatgagcaagatcagaggcgagatcggcatgagtcaagaagtctgccttccaaggcaccaagggacaccaagggaaaggagcaggaagggactaac 117  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  13833664 aggttatgagcaagatcagagacgagatcggcatgagccaagaagtctgccttccaaggcaccaagggacaccaagggaaatgagaaggaagggactaac 13833763  T
Q  118 gaaagaacatacgagtcaccaacgcacaccattgataaccgacaaaattgtaggttattaccttgcacttatcccccatagtctgggaaataaagtgatt 217  Q
    ||||| ||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  13833764 gaaaggacatacgagccaccaacgcacaccattgataactgacaaacttgtaggttattaccttgcacttatcatccatagtctgggaaataaagtgatt 13833863  T
Q  218 gcattgcctaa 228  Q
    |||||||||||    
T  13833864 gcattgcctaa 13833874  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 193
Target Start/End: Complemental strand, 47900892 - 47900847
Alignment:
Q  148 attgataaccgacaaaattgtaggttattaccttgcacttatcccc 193  Q
    |||||||||||||||| ||||||||||| || ||||||||||||||    
T  47900892 attgataaccgacaaatttgtaggttatcacgttgcacttatcccc 47900847  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 193
Target Start/End: Original strand, 42525202 - 42525246
Alignment:
Q  148 attgataaccgacaaaattgtaggttattaccttgcacttatcccc 193  Q
    |||||||||| ||||||| || ||||||||||||||||||||||||    
T  42525202 attgataacctacaaaat-gttggttattaccttgcacttatcccc 42525246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 181
Target Start/End: Original strand, 28870943 - 28870976
Alignment:
Q  148 attgataaccgacaaaattgtaggttattacctt 181  Q
    ||||||||||||||||| ||||||||||||||||    
T  28870943 attgataaccgacaaaaatgtaggttattacctt 28870976  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 181
Target Start/End: Complemental strand, 9354042 - 9354009
Alignment:
Q  148 attgataaccgacaaaattgtaggttattacctt 181  Q
    ||||||||||||||||| ||||||||||||||||    
T  9354042 attgataaccgacaaaaatgtaggttattacctt 9354009  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 181
Target Start/End: Original strand, 25136756 - 25136788
Alignment:
Q  149 ttgataaccgacaaaattgtaggttattacctt 181  Q
    |||||||||||||||| ||||||||||||||||    
T  25136756 ttgataaccgacaaaaatgtaggttattacctt 25136788  T

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