View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11582_high_53 (Length: 244)

Name: NF11582_high_53
Description: NF11582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11582_high_53
NF11582_high_53
[»] chr8 (9 HSPs)
chr8 (86-207)||(38956884-38957005)
chr8 (82-194)||(31206306-31206418)
chr8 (78-186)||(45368729-45368837)
chr8 (82-194)||(5020052-5020162)
chr8 (125-187)||(5217763-5217825)
chr8 (125-194)||(9632968-9633037)
chr8 (83-196)||(20169714-20169827)
chr8 (73-117)||(7044406-7044450)
chr8 (125-165)||(40299687-40299727)
[»] chr5 (13 HSPs)
chr5 (81-194)||(8247062-8247175)
chr5 (78-194)||(3263739-3263855)
chr5 (79-194)||(10051723-10051838)
chr5 (125-194)||(5356296-5356365)
chr5 (83-186)||(28793332-28793435)
chr5 (82-188)||(35395184-35395290)
chr5 (78-194)||(22473426-22473543)
chr5 (125-194)||(19692763-19692832)
chr5 (87-194)||(1354346-1354453)
chr5 (80-186)||(21582366-21582472)
chr5 (125-194)||(142353-142422)
chr5 (125-165)||(14042502-14042542)
chr5 (81-117)||(22871915-22871951)
[»] chr4 (19 HSPs)
chr4 (78-194)||(49446591-49446708)
chr4 (78-194)||(44646523-44646639)
chr4 (78-194)||(44647879-44647995)
chr4 (93-187)||(42197042-42197136)
chr4 (78-194)||(20390017-20390133)
chr4 (82-194)||(41468080-41468192)
chr4 (125-188)||(42844082-42844145)
chr4 (98-191)||(50115059-50115149)
chr4 (84-178)||(33982423-33982517)
chr4 (93-177)||(9802631-9802715)
chr4 (78-196)||(24395192-24395311)
chr4 (125-194)||(44088305-44088374)
chr4 (77-194)||(27346289-27346406)
chr4 (126-194)||(38494756-38494824)
chr4 (78-182)||(6316816-6316920)
chr4 (148-194)||(49769115-49769161)
chr4 (78-168)||(12103864-12103954)
chr4 (126-196)||(1696184-1696254)
chr4 (97-187)||(49144774-49144864)
[»] chr1 (21 HSPs)
chr1 (79-194)||(31745405-31745520)
chr1 (78-194)||(36393476-36393592)
chr1 (78-194)||(40377034-40377150)
chr1 (78-188)||(45584531-45584641)
chr1 (81-193)||(7549838-7549950)
chr1 (82-194)||(31652619-31652730)
chr1 (87-196)||(34596116-34596223)
chr1 (78-173)||(4039621-4039716)
chr1 (80-189)||(5851529-5851636)
chr1 (80-194)||(50974572-50974686)
chr1 (127-187)||(12148304-12148364)
chr1 (79-196)||(40203074-40203191)
chr1 (125-186)||(25302111-25302172)
chr1 (80-165)||(34445663-34445748)
chr1 (127-194)||(42850095-42850162)
chr1 (81-155)||(25095604-25095678)
chr1 (127-187)||(44719222-44719282)
chr1 (78-194)||(48947196-48947312)
chr1 (86-196)||(12636303-12636414)
chr1 (131-168)||(35438053-35438090)
chr1 (81-194)||(13954129-13954241)
[»] chr7 (17 HSPs)
chr7 (81-194)||(8170026-8170139)
chr7 (82-194)||(30412918-30413030)
chr7 (78-187)||(47507602-47507711)
chr7 (84-194)||(38452169-38452279)
chr7 (78-175)||(42493700-42493798)
chr7 (125-194)||(46684554-46684623)
chr7 (80-173)||(2741167-2741260)
chr7 (90-186)||(48137787-48137883)
chr7 (83-196)||(44391424-44391537)
chr7 (125-194)||(15034796-15034866)
chr7 (86-183)||(2964049-2964146)
chr7 (127-186)||(47305532-47305592)
chr7 (125-187)||(11678038-11678100)
chr7 (125-194)||(36285776-36285843)
chr7 (84-170)||(5248093-5248179)
chr7 (127-196)||(27359398-27359468)
chr7 (127-168)||(15995930-15995971)
[»] chr3 (12 HSPs)
chr3 (78-194)||(18399157-18399274)
chr3 (79-194)||(52340119-52340235)
chr3 (78-194)||(34758921-34759037)
chr3 (131-190)||(7754772-7754831)
chr3 (73-194)||(27968185-27968306)
chr3 (82-194)||(30687077-30687189)
chr3 (80-194)||(4033025-4033138)
chr3 (80-194)||(54911996-54912110)
chr3 (82-188)||(38704954-38705060)
chr3 (81-196)||(25548194-25548310)
chr3 (78-186)||(38388704-38388812)
chr3 (125-195)||(19898099-19898169)
[»] chr2 (11 HSPs)
chr2 (81-194)||(18053016-18053128)
chr2 (78-194)||(8773671-8773787)
chr2 (81-194)||(8789851-8789964)
chr2 (81-186)||(20683003-20683108)
chr2 (81-194)||(44941079-44941192)
chr2 (81-187)||(4238331-4238436)
chr2 (79-194)||(42945012-42945127)
chr2 (80-194)||(34546266-34546380)
chr2 (84-195)||(35228732-35228843)
chr2 (80-115)||(42924494-42924529)
chr2 (125-186)||(7271819-7271880)
[»] chr6 (5 HSPs)
chr6 (78-194)||(12383016-12383132)
chr6 (127-183)||(35241453-35241509)
chr6 (125-194)||(22695479-22695549)
chr6 (84-178)||(8176324-8176418)
chr6 (80-117)||(22696011-22696048)


Alignment Details
Target: chr8 (Bit Score: 77; Significance: 7e-36; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 86 - 207
Target Start/End: Original strand, 38956884 - 38957005
Alignment:
Q  86 tttaaggattctaaaagaagtaattattttatnnnnnnntcaaatatttcgatttccgatgcattgattatacatattttcatgataagttaccatttaa 185  Q
    |||||||||||||||||| ||||||| |||||       ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  38956884 tttaaggattctaaaagatgtaattaatttataaaaaagtcaaatatttcgatttccgatgcattgattacacatattttcatgataagttatcatttaa 38956983  T
Q  186 aggccttaaaggcactggttaa 207  Q
    || |||||| ||||||||||||    
T  38956984 agaccttaagggcactggttaa 38957005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 82 - 194
Target Start/End: Original strand, 31206306 - 31206418
Alignment:
Q  82 actctttaaggattctaaaagaagtaattattttatnnnnnnntcaaatatttcgatttccgatgcattgattatacatattttcatgataagttaccat 181  Q
    ||||||||||||||| ||||| || |||||||||||       |||||||||| |||||||||||||||||||| ||||||||| ||||||| |||| ||    
T  31206306 actctttaaggattcaaaaagtagaaattattttataaaaaaatcaaatattttgatttccgatgcattgattacacatatttttatgataaattactat 31206405  T
Q  182 ttaaaggccttaa 194  Q
    |||||||||||||    
T  31206406 ttaaaggccttaa 31206418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 78 - 186
Target Start/End: Complemental strand, 45368837 - 45368729
Alignment:
Q  78 gggcactctttaaggattctaaaagaagtaattattttatnnnnnnntcaaatatttcgatttccgatgcattgattatacatattttcatgataagtta 177  Q
    ||||||||||||||||||| |||| ||| |||||||||||       | ||||||||| |||| ||||||| ||||||||||||||||||||||||||||    
T  45368837 gggcactctttaaggattccaaaaaaagaaattattttataaaaaagttaaatatttcaattttcgatgcaatgattatacatattttcatgataagtta 45368738  T
Q  178 ccatttaaa 186  Q
    |||||||||    
T  45368737 ccatttaaa 45368729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 82 - 194
Target Start/End: Complemental strand, 5020162 - 5020052
Alignment:
Q  82 actctttaaggattctaaaagaagtaattattttatnnnnnnntcaaatatttcgatttccgatgcattgattatacatattttcatgataagttaccat 181  Q
    |||||||||||||||||||||||| ||| |||||||       ||||| ||||| ||||||||| ||||||||| ||||  |||||||| ||||||||||    
T  5020162 actctttaaggattctaaaagaagaaataattttataaaaaagtcaaagatttcaatttccgatacattgattacacat--tttcatgacaagttaccat 5020065  T
Q  182 ttaaaggccttaa 194  Q
    |||||||||||||    
T  5020064 ttaaaggccttaa 5020052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 125 - 187
Target Start/End: Complemental strand, 5217825 - 5217763
Alignment:
Q  125 tcaaatatttcgatttccgatgcattgattatacatattttcatgataagttaccatttaaag 187  Q
    |||||||||||||||||||||| |||||||| ||||||||| ||||||| ||||||| |||||    
T  5217825 tcaaatatttcgatttccgatgtattgattacacatatttttatgataaattaccatataaag 5217763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 125 - 194
Target Start/End: Original strand, 9632968 - 9633037
Alignment:
Q  125 tcaaatatttcgatttccgatgcattgattatacatattttcatgataagttaccatttaaaggccttaa 194  Q
    |||||||||| |||||| ||||||||||||| |||||||||||| |||| || |||||||||| ||||||    
T  9632968 tcaaatattttgatttcagatgcattgattacacatattttcataataaattgccatttaaagaccttaa 9633037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 83 - 196
Target Start/End: Complemental strand, 20169827 - 20169714
Alignment:
Q  83 ctctttaaggattctaaaagaagtaattattttatnnnnnnntcaaatatttcgatttccgatgcattgattatacatattttcatgataagttaccatt 182  Q
    |||||||| |||||||||||||  |||||||||||         ||||||||||||||   |||||||||||||| ||||||||||   |||||||||||    
T  20169827 ctctttaaagattctaaaagaataaattattttataaaaagtcaaaatatttcgatttttaatgcattgattatatatattttcatacaaagttaccatt 20169728  T
Q  183 taaaggccttaaag 196  Q
    |||||| |||||||    
T  20169727 taaaggtcttaaag 20169714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 117
Target Start/End: Complemental strand, 7044450 - 7044406
Alignment:
Q  73 gccccgggcactctttaaggattctaaaagaagtaattattttat 117  Q
    |||| |||||||||||||||||||||||||||| ||||| |||||    
T  7044450 gccctgggcactctttaaggattctaaaagaagaaattaatttat 7044406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 165
Target Start/End: Original strand, 40299687 - 40299727
Alignment:
Q  125 tcaaatatttcgatttccgatgcattgattatacatatttt 165  Q
    |||||| ||||||||||| |||||||||||||||| |||||    
T  40299687 tcaaatgtttcgatttccaatgcattgattatacacatttt 40299727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 4e-31; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 81 - 194
Target Start/End: Original strand, 8247062 - 8247175
Alignment:
Q  81 cactctttaaggattctaaaagaagtaattattttatnnnnnnntcaaatatttcgatttccgatgcattgattatacatattttcatgataagttacca 180  Q
    |||||||||||||||| |||||||| ||| |||||||       |||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  8247062 cactctttaaggattccaaaagaagaaataattttataaaaaagtcaaatatttcgatttccgatgcattgattatacaacttttcatgataagttacca 8247161  T
Q  181 tttaaaggccttaa 194  Q
    ||||||| ||||||    
T  8247162 tttaaagaccttaa 8247175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 78 - 194
Target Start/End: Original strand, 3263739 - 3263855
Alignment:
Q  78 gggcactctttaaggattctaaaagaagtaattattttatnnnnnnntcaaatatttcgatttccgatgcattgattatacatattttcatgataagtta 177  Q
    |||||||||||||| |||  |||||||| ||| |||||||       ||||| ||||||||||||||||||||||||| ||||||||| |||||||||||    
T  3263739 gggcactctttaagaatttcaaaagaagaaatcattttataaaaaagtcaaagatttcgatttccgatgcattgattacacatattttaatgataagtta 3263838  T
Q  178 ccatttaaaggccttaa 194  Q
    |||||||||| ||||||    
T  3263839 ccatttaaagaccttaa 3263855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 79 - 194
Target Start/End: Original strand, 10051723 - 10051838
Alignment:
Q  79 ggcactctttaaggattctaaaagaagtaattattttatnnnnnnntcaaatatttcgatttccgatgcattgattatacatattttcatgataagttac 178  Q
    ||||||||||||||||| ||||||||| ||| |||||||       ||||||||||  |||||||||||||||||||||||  ||||||| |||||||||    
T  10051723 ggcactctttaaggattttaaaagaagaaataattttataaaaaagtcaaatatttatatttccgatgcattgattatacaacttttcataataagttac 10051822  T
Q  179 catttaaaggccttaa 194  Q
    |||||||||| |||||    
T  10051823 catttaaaggtcttaa 10051838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 125 - 194
Target Start/End: Complemental strand, 5356365 - 5356296
Alignment:
Q  125 tcaaatatttcgatttccgatgcattgattatacatattttcatgataagttaccatttaaaggccttaa 194  Q
    |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  5356365 tcaaatatttcgattttcgatgcattgattacacatattttcatgataagttaccatttaaagaccttaa 5356296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 83 - 186
Target Start/End: Original strand, 28793332 - 28793435
Alignment:
Q  83 ctctttaaggattctaaaagaagtaattattttatnnnnnnntcaaatatttcgatttccgatgcattgattatacatattttcatgataagttaccatt 182  Q
    |||||||||||||| |||||||| ||| |||||||       |||||||||||||||||||||||||| |||| | ||||||| ||||||| ||||||||    
T  28793332 ctctttaaggattccaaaagaagaaatgattttataaaaaagtcaaatatttcgatttccgatgcattaattacatatatttttatgataatttaccatt 28793431  T
Q  183 taaa 186  Q
    ||||    
T  28793432 taaa 28793435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 82 - 188
Target Start/End: Original strand, 35395184 - 35395290
Alignment:
Q  82 actctttaaggattctaaaagaagtaattattttatnnnnnnntcaaatatttcgatttccgatgcattgattatacatattttcatgataagttaccat 181  Q
    ||||||||||||||| |||||||| || ||||||||       ||||||||||  |||| |||||||||||||| |||||||||||||||||||| ||||    
T  35395184 actctttaaggattccaaaagaagaaactattttataaaaaagtcaaatattttaattttcgatgcattgattacacatattttcatgataagttgccat 35395283  T
Q  182 ttaaagg 188  Q
    | |||||    
T  35395284 taaaagg 35395290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 78 - 194
Target Start/End: Original strand, 22473426 - 22473543
Alignment:
Q  78 gggcactctttaaggattctaaaagaagtaattattttatnnnnnnn-tcaaatatttcgatttccgatgcattgattatacatattttcatgataagtt 176  Q
    ||||| ||||||||||||  |||||||| |||||||||||        ||||||||||  ||||| ||||||||||||| ||||||||||| ||||||||    
T  22473426 gggcattctttaaggatttcaaaagaagaaattattttataaaaaaaatcaaatattttaatttctgatgcattgattacacatattttcacgataagtt 22473525  T
Q  177 accatttaaaggccttaa 194  Q
    ||||||||||| ||||||    
T  22473526 accatttaaagcccttaa 22473543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 125 - 194
Target Start/End: Original strand, 19692763 - 19692832
Alignment:
Q  125 tcaaatatttcgatttccgatgcattgattatacatattttcatgataagttaccatttaaaggccttaa 194  Q
    |||||||||||||||| | |||||||||||| ||||| ||| |||||||||||| |||||||||||||||    
T  19692763 tcaaatatttcgattttcaatgcattgattacacataatttgatgataagttacaatttaaaggccttaa 19692832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 87 - 194
Target Start/End: Complemental strand, 1354453 - 1354346
Alignment:
Q  87 ttaaggattctaaaagaagtaattattttatnnnnnnntcaaatatttcgatttccgatgcattgattatacatattttcatgataagttaccatttaaa 186  Q
    ||||| ||||||||| ||| |||||||||||       | |||||||||||||||  ||  |||||||||| ||||||||||||||| ||||| ||||||    
T  1354453 ttaagaattctaaaaaaagaaattattttataaaaaagttaaatatttcgatttctaatatattgattatatatattttcatgataatttaccttttaaa 1354354  T
Q  187 ggccttaa 194  Q
    ||||||||    
T  1354353 ggccttaa 1354346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 80 - 186
Target Start/End: Original strand, 21582366 - 21582472
Alignment:
Q  80 gcactctttaaggattctaaaagaagtaattattttatnnnnnnntcaaatatttcgatttccgatgcattgattatacatattttcatgataagttacc 179  Q
    ||||| ||||||||||| |||||||  |||||||||||       ||||||||||||||||| ||| || |||| | ||| ||||||||||||||||| |    
T  21582366 gcactttttaaggattccaaaagaataaattattttataaaatagtcaaatatttcgatttctgatacaatgatcacacacattttcatgataagttatc 21582465  T
Q  180 atttaaa 186  Q
     ||||||    
T  21582466 ctttaaa 21582472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 194
Target Start/End: Complemental strand, 142422 - 142353
Alignment:
Q  125 tcaaatatttcgatttccgatgcattgattatacatattttcatgataagttaccatttaaaggccttaa 194  Q
    ||||||||||| ||||| ||| ||||||||| ||||| ||| ||||||||||||  |||||||| |||||    
T  142422 tcaaatatttcaatttctgatacattgattacacataattttatgataagttacattttaaagggcttaa 142353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 165
Target Start/End: Original strand, 14042502 - 14042542
Alignment:
Q  125 tcaaatatttcgatttccgatgcattgattatacatatttt 165  Q
    |||||||||| ||||||| |||||||||||||||| |||||    
T  14042502 tcaaatattttgatttccaatgcattgattatacaaatttt 14042542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 117
Target Start/End: Original strand, 22871915 - 22871951
Alignment:
Q  81 cactctttaaggattctaaaagaagtaattattttat 117  Q
    ||||||||||||||||||||||||| || ||||||||    
T  22871915 cactctttaaggattctaaaagaagaaaatattttat 22871951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 78 - 194
Target Start/End: Complemental strand, 49446708 - 49446591
Alignment:
Q  78 gggcactctttaaggattctaaaagaagtaattattttatnnnnnnn-tcaaatatttcgatttccgatgcattgattatacatattttcatgataagtt 176  Q
    ||||||||||||||||||| |||||||| | |||||||||        ||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  49446708 gggcactctttaaggattccaaaagaagaagttattttataaaaaaagtcaaatatttcgatttccgatgcattgattacacatattttcatgataagtt 49446609  T
Q  177 accatttaaaggccttaa 194  Q
    || |||||||||||||||    
T  49446608 actatttaaaggccttaa 49446591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 78 - 194
Target Start/End: Complemental strand, 44646639 - 44646523
Alignment:
Q  78 gggcactctttaaggattctaaaagaagtaattattttatnnnnnnntcaaatatttcgatttccgatgcattgattatacatattttcatgataagtta 177  Q
    ||||| ||||||||||||  |||||||| || ||||||||       ||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  44646639 gggcattctttaaggatttcaaaagaagaaactattttataataaagtcaaatatttcgatttccgatgcattgattacacatattttcatgataagtta 44646540  T
Q  178 ccatttaaaggccttaa 194  Q
    | ||| ||| |||||||    
T  44646539 ctattcaaaagccttaa 44646523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 78 - 194
Target Start/End: Complemental strand, 44647995 - 44647879
Alignment:
Q  78 gggcactctttaaggattctaaaagaagtaattattttatnnnnnnntcaaatatttcgatttccgatgcattgattatacatattttcatgataagtta 177  Q
    ||||||||||||| ||||| |||||||| || ||||||||       ||||||||||| |||||||||||||| |||| |||||||||||||||||||||    
T  44647995 gggcactctttaaagattccaaaagaagaaactattttataataaaatcaaatatttcaatttccgatgcattaattacacatattttcatgataagtta 44647896  T
Q  178 ccatttaaaggccttaa 194  Q
    | ||| |||||||||||    
T  44647895 ctattcaaaggccttaa 44647879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 93 - 187
Target Start/End: Original strand, 42197042 - 42197136
Alignment:
Q  93 attctaaaagaagtaattattttatnnnnnnntcaaatatttcgatttccgatgcattgattatacatattttcatgataagttaccatttaaag 187  Q
    ||||||||||||| |||||||||||       |||||||||| ||||| |||| ||||||||| ||||||||| ||||||| |||||||||||||    
T  42197042 attctaaaagaagaaattattttattaaaaaatcaaatattttgattttcgatacattgattacacatatttttatgataaattaccatttaaag 42197136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 78 - 194
Target Start/End: Original strand, 20390017 - 20390133
Alignment:
Q  78 gggcactctttaaggattctaaaagaagtaattattttatnnnnnnntcaaatatttcgatttccgatgcattgattatacatattttcatgataagtta 177  Q
    ||||| |||||||| |||| |||| ||| ||| |||||||       |||||||||| ||||| |||||||||||| | |||  ||||||||||||||||    
T  20390017 gggcattctttaagaattccaaaacaagaaataattttataaaaaagtcaaatattttgattttcgatgcattgatcacacaacttttcatgataagtta 20390116  T
Q  178 ccatttaaaggccttaa 194  Q
    ||||||||| |||||||    
T  20390117 ccatttaaaagccttaa 20390133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 82 - 194
Target Start/End: Original strand, 41468080 - 41468192
Alignment:
Q  82 actctttaaggattctaaaagaagtaattattttatnnnnnnntcaaatatttcgatttccgatgcattgattatacatattttcatgataagttaccat 181  Q
    |||||||||| |||| |||||||| |||||| ||||       | ||||||| ||||||| ||||||||||||| |  |||||| |||| ||||||||||    
T  41468080 actctttaagaattccaaaagaagaaattatgttataaaaaagttaaatattccgatttctgatgcattgattacatgtatttttatgaaaagttaccat 41468179  T
Q  182 ttaaaggccttaa 194  Q
    |||||||||||||    
T  41468180 ttaaaggccttaa 41468192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 125 - 188
Target Start/End: Original strand, 42844082 - 42844145
Alignment:
Q  125 tcaaatatttcgatttccgatgcattgattatacatattttcatgataagttaccatttaaagg 188  Q
    |||||||||||||||| |||||||||||||| |||||||||||| |||| ||||| ||||||||    
T  42844082 tcaaatatttcgattttcgatgcattgattacacatattttcataataaattaccctttaaagg 42844145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 98 - 191
Target Start/End: Original strand, 50115059 - 50115149
Alignment:
Q  98 aaaagaagtaattattttatnnnnnnntcaaatatttcgatttccgatgcattgattatacatattttcatgataagttaccatttaaaggcct 191  Q
    |||||||| |||||||||||       ||||| |||||||||||| |||||||||||| |||||||   |||||||||||||||||||||||||    
T  50115059 aaaagaagaaattattttataaaaaagtcaaagatttcgatttcctatgcattgattacacatatt---atgataagttaccatttaaaggcct 50115149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 84 - 178
Target Start/End: Original strand, 33982423 - 33982517
Alignment:
Q  84 tctttaaggattctaaaagaagtaattattttatnnnnnnntcaaatatttcgatttccgatgcattgattatacatattttcatgataagttac 178  Q
    ||||||||||||  |||||||  |||||||||||       | ||||||||||||||||||| ||||||||| | ||||||||||||||||||||    
T  33982423 tctttaaggatttcaaaagaaaaaattattttataaaaaagttaaatatttcgatttccgatacattgattacatatattttcatgataagttac 33982517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 93 - 177
Target Start/End: Complemental strand, 9802715 - 9802631
Alignment:
Q  93 attctaaaagaagtaattattttatnnnnnnntcaaatatttcgatttccgatgcattgattatacatattttcatgataagtta 177  Q
    ||||||||||||  |||||||||||       |||||||||| |||||||||| ||||||||| ||||||||| |||||||||||    
T  9802715 attctaaaagaaaaaattattttataaaaaagtcaaatattttgatttccgatacattgattacacatatttttatgataagtta 9802631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 78 - 196
Target Start/End: Complemental strand, 24395311 - 24395192
Alignment:
Q  78 gggcactctttaaggattctaaaagaagtaattattttat-nnnnnnntcaaatatttcgatttccgatgcattgattatacatattttcatgataagtt 176  Q
    |||||||||||||||||||||||||||| ||||| |||||        |||||||||||||||||  |  ||||||||| ||||||||||||   |||||    
T  24395311 gggcactctttaaggattctaaaagaagaaattaatttataaaaaaggtcaaatatttcgatttctaagacattgattacacatattttcatacaaagtt 24395212  T
Q  177 accatttaaaggccttaaag 196  Q
    || || |||||| |||||||    
T  24395211 actatataaaggtcttaaag 24395192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 125 - 194
Target Start/End: Original strand, 44088305 - 44088374
Alignment:
Q  125 tcaaatatttcgatttccgatgcattgattatacatattttcatgataagttaccatttaaaggccttaa 194  Q
    |||||||||| |||||  | ||||||||||| |||||| ||||||||||||||| |||||||| ||||||    
T  44088305 tcaaatattttgatttttggtgcattgattacacatatcttcatgataagttactatttaaagtccttaa 44088374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 77 - 194
Target Start/End: Original strand, 27346289 - 27346406
Alignment:
Q  77 cgggcactctttaaggattctaaaagaagtaattattttatnnnnnnntcaaatatttcgatttccgatgcattgattatacatattttcatgataagtt 176  Q
    ||||||||||||||||||||||||| ||| | |||||||||       ||||| |||| |||||| | |||||| |||||||| ||||| ||||||| ||    
T  27346289 cgggcactctttaaggattctaaaaaaagaatttattttataaaaaagtcaaagattttgatttctggtgcatttattatacacatttttatgataaatt 27346388  T
Q  177 accatttaaaggccttaa 194  Q
      | ||||||| ||||||    
T  27346389 ttcttttaaagcccttaa 27346406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 126 - 194
Target Start/End: Complemental strand, 38494824 - 38494756
Alignment:
Q  126 caaatatttcgatttccgatgcattgattatacatattttcatgataagttaccatttaaaggccttaa 194  Q
    ||||| ||||||||| |||||||||||||| ||||||||| ||||||| ||| ||| ||||| ||||||    
T  38494824 caaatctttcgattttcgatgcattgattacacatatttttatgataaattatcatataaagaccttaa 38494756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 182
Target Start/End: Complemental strand, 6316920 - 6316816
Alignment:
Q  78 gggcactctttaaggattctaaaagaagtaattattttatnnnnnnntcaaatatttcgatttccgatgcattgattatacatattttcatgataagtta 177  Q
    ||||||||||||| ||||  |||||||| ||| |||||||        |||| |||| ||||| | |||||||||||| |||||||||||||||||||||    
T  6316920 gggcactctttaaagatttcaaaagaagaaataattttataaaaaaggcaaagattttgattttcaatgcattgattacacatattttcatgataagtta 6316821  T
Q  178 ccatt 182  Q
     ||||    
T  6316820 tcatt 6316816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 148 - 194
Target Start/End: Complemental strand, 49769161 - 49769115
Alignment:
Q  148 attgattatacatattttcatgataagttaccatttaaaggccttaa 194  Q
    |||||||| ||||||||| |||||||||||||||||||||| |||||    
T  49769161 attgattacacatatttttatgataagttaccatttaaaggtcttaa 49769115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 168
Target Start/End: Complemental strand, 12103954 - 12103864
Alignment:
Q  78 gggcactctttaaggattctaaaagaagtaattattttatnnnnnnntcaaatatttcgatttccgatgcattgattatacatattttcat 168  Q
    ||||||| |||||||||||||||||||  |||||||| ||       ||||||| |||||||||| |  ||||||||| ||||||||||||    
T  12103954 gggcactttttaaggattctaaaagaataaattatttcataaaaaagtcaaataattcgatttccaaaacattgattacacatattttcat 12103864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 196
Target Start/End: Complemental strand, 1696254 - 1696184
Alignment:
Q  126 caaatatttcgatttccgatgcattgattatacatattttcatgataagttaccatttaaaggccttaaag 196  Q
    |||||||||| ||||||||||||||||||| | | |||||||  | ||||||| ||||||| | |||||||    
T  1696254 caaatatttcaatttccgatgcattgattacatacattttcaaaaaaagttactatttaaaagtcttaaag 1696184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 187
Target Start/End: Original strand, 49144774 - 49144864
Alignment:
Q  97 taaaagaagtaattattttatnnnnnnntcaaatatttcgatttccgatgcattgattatacatattttcatgataagttaccatttaaag 187  Q
    ||||||||| |||||||||||       | ||| |||| ||||| |||||||||||||| | ||||||| |||| || |||||||||||||    
T  49144774 taaaagaagaaattattttataaaaaagttaaaaattttgattttcgatgcattgattacatatatttttatgaaaaattaccatttaaag 49144864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 79 - 194
Target Start/End: Complemental strand, 31745520 - 31745405
Alignment:
Q  79 ggcactctttaaggattctaaaagaagtaattattttatnnnnnnntcaaatatttcgatttccgatgcattgattatacatattttcatgataagttac 178  Q
    |||||||||||| |||||||||||||  |||||||||||       |||||||||||||||  |||||||||||||| ||||||||| ||||||||||||    
T  31745520 ggcactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatatttttatgataagttac 31745421  T
Q  179 catttaaaggccttaa 194  Q
     |||||||||||||||    
T  31745420 tatttaaaggccttaa 31745405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 78 - 194
Target Start/End: Original strand, 36393476 - 36393592
Alignment:
Q  78 gggcactctttaaggattctaaaagaagtaattattttatnnnnnnntcaaatatttcgatttccgatgcattgattatacatattttcatgataagtta 177  Q
    ||||||||||||||||||  |||||||  |||||| ||||       |||||||||| ||||| |||||||||||||| || ||||||||||||||||||    
T  36393476 gggcactctttaaggatttcaaaagaaaaaattatgttataaaaaaatcaaatattttgattttcgatgcattgattacacgtattttcatgataagtta 36393575  T
Q  178 ccatttaaaggccttaa 194  Q
    ||||||||||| |||||    
T  36393576 ccatttaaaggtcttaa 36393592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 78 - 194
Target Start/End: Original strand, 40377034 - 40377150
Alignment:
Q  78 gggcactctttaaggattctaaaagaagtaattattttatnnnnnnntcaaatatttcgatttccgatgcattgattatacatattttcatgataagtta 177  Q
    ||||||||||||||||||| |||||||| ||| |||||||       |||||||||| |||| || || ||||||||| |||  |||||||||||| |||    
T  40377034 gggcactctttaaggattccaaaagaagaaataattttataaaaaagtcaaatattttgattcccaattcattgattacacaacttttcatgataaatta 40377133  T
Q  178 ccatttaaaggccttaa 194  Q
    |||||||||||||||||    
T  40377134 ccatttaaaggccttaa 40377150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 78 - 188
Target Start/End: Original strand, 45584531 - 45584641
Alignment:
Q  78 gggcactctttaaggattctaaaagaagtaattattttatnnnnnnntcaaatatttcgatttccgatgcattgattatacatattttcatgataagtta 177  Q
    ||||||||||||||||||| |||||||| |||||||||||       | ||||||||  ||||| |||| |||||||| |||||||||||||||||||||    
T  45584531 gggcactctttaaggattccaaaagaagaaattattttataaaaaagttaaatattttaatttctgatgtattgattacacatattttcatgataagtta 45584630  T
Q  178 ccatttaaagg 188  Q
    |  ||||||||    
T  45584631 ctttttaaagg 45584641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 81 - 193
Target Start/End: Original strand, 7549838 - 7549950
Alignment:
Q  81 cactctttaaggattctaaaagaagtaattattttatnnnnnnntcaaatatttcgatttccgatgcattgattatacatattttcatgataagttacca 180  Q
    ||||||||||| |||  |||||||| ||| |||||||       ||||||||||||||||| ||||||||||| | |||  ||||||||||||||||| |    
T  7549838 cactctttaagaatttcaaaagaagaaataattttataaaaaagtcaaatatttcgatttctgatgcattgatcacacaacttttcatgataagttacaa 7549937  T
Q  181 tttaaaggcctta 193  Q
    |||||||||||||    
T  7549938 tttaaaggcctta 7549950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 82 - 194
Target Start/End: Original strand, 31652619 - 31652730
Alignment:
Q  82 actctttaaggattctaaaagaagtaattattttatnnnnnnntcaaatatttcgatttccgatgcattgattatacatattttcatgataagttaccat 181  Q
    ||||||||||||||  |||| ||| |||||||||||       ||||||||||  |||||||||||| |||||| |||||||||||||||| ||||||||    
T  31652619 actctttaaggatttcaaaa-aagaaattattttataaaaaagtcaaatattttaatttccgatgcaatgattacacatattttcatgataggttaccat 31652717  T
Q  182 ttaaaggccttaa 194  Q
    |||||| ||||||    
T  31652718 ttaaagcccttaa 31652730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 87 - 196
Target Start/End: Complemental strand, 34596223 - 34596116
Alignment:
Q  87 ttaaggattctaaaagaagtaattattttatnnnnnnntcaaatatttcgatttccgatgcattgattatacatattttcatgataagttaccatttaaa 186  Q
    ||||||||||||||||||| |||||||||||       |||||||||||||||| | |||||||||||| ||||| |||||| | |||||| ||||||||    
T  34596223 ttaaggattctaaaagaagaaattattttataaaat--tcaaatatttcgattttcaatgcattgattacacataatttcataaaaagttatcatttaaa 34596126  T
Q  187 ggccttaaag 196  Q
    || |||||||    
T  34596125 ggtcttaaag 34596116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 78 - 173
Target Start/End: Complemental strand, 4039716 - 4039621
Alignment:
Q  78 gggcactctttaaggattctaaaagaagtaattattttatnnnnnnntcaaatatttcgatttccgatgcattgattatacatattttcatgataa 173  Q
    ||||||||||||||||||| |||||||  |||||||||||       |||||||||||||||||| |||||||||||| | ||||||| |||||||    
T  4039716 gggcactctttaaggattccaaaagaataaattattttataaaaaagtcaaatatttcgatttccaatgcattgattacatatatttttatgataa 4039621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 80 - 189
Target Start/End: Original strand, 5851529 - 5851636
Alignment:
Q  80 gcactctttaaggattctaaaagaagtaattattttatnnnnnnntcaaatatttcgatttccgatgcattgattatacatattttcatgataagttacc 179  Q
    ||||||||||||||||  |||||||| ||| |||||||       ||||| |||||||||| |||||||||||||| | |||||  ||||||||||||||    
T  5851529 gcactctttaaggatttcaaaagaagaaataattttataaaaaaatcaaagatttcgattttcgatgcattgattacaaatatt--catgataagttacc 5851626  T
Q  180 atttaaaggc 189  Q
    ||||||||||    
T  5851627 atttaaaggc 5851636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 80 - 194
Target Start/End: Complemental strand, 50974686 - 50974572
Alignment:
Q  80 gcactctttaaggattctaaaagaagtaattattttatnnnnnnntcaaatatttcgatttccgatgcattgattatacatattttcatgataagttacc 179  Q
    |||||||| |||||||  |||||||  |||||||||||       ||||||||||| |||| ||||||||| |||| | ||||||||||||||| |||||    
T  50974686 gcactcttgaaggatttcaaaagaaaaaattattttataaaaaagtcaaatatttcaattttcgatgcattaattacatatattttcatgataaattacc 50974587  T
Q  180 atttaaaggccttaa 194  Q
    ||||||||| |||||    
T  50974586 atttaaaggtcttaa 50974572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 127 - 187
Target Start/End: Complemental strand, 12148364 - 12148304
Alignment:
Q  127 aaatatttcgatttccgatgcattgattatacatattttcatgataagttaccatttaaag 187  Q
    |||||||| ||||||| |||||||| ||| |||||||||||||||||||||||||||||||    
T  12148364 aaatattttgatttccaatgcattggttacacatattttcatgataagttaccatttaaag 12148304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 79 - 196
Target Start/End: Complemental strand, 40203191 - 40203074
Alignment:
Q  79 ggcactctttaaggattctaaaagaagtaattattttatnnnnnnntcaaatatttcgatttccgatgcattgattatacatattttcatgataagttac 178  Q
    |||||||||||||||||  |||| ||| |||||||| ||       ||||||||||| |||||| |||||||||||| |||||||||||    |||||||    
T  40203191 ggcactctttaaggattacaaaacaagaaattatttcataaaaaagtcaaatatttcaatttccaatgcattgattacacatattttcagacaaagttac 40203092  T
Q  179 catttaaaggccttaaag 196  Q
    ||||||||| ||||||||    
T  40203091 catttaaagaccttaaag 40203074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 125 - 186
Target Start/End: Original strand, 25302111 - 25302172
Alignment:
Q  125 tcaaatatttcgatttccgatgcattgattatacatattttcatgataagttaccatttaaa 186  Q
    ||||| |||||||||| | || ||||||||| ||||||||||||||||||||||||||||||    
T  25302111 tcaaagatttcgattttcaatacattgattacacatattttcatgataagttaccatttaaa 25302172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 80 - 165
Target Start/End: Original strand, 34445663 - 34445748
Alignment:
Q  80 gcactctttaaggattctaaaagaagtaattattttatnnnnnnntcaaatatttcgatttccgatgcattgattatacatatttt 165  Q
    ||||||||||||||||| |||||||| ||||| |||||       |||||||||||||||||| |||||||||||| |||| ||||    
T  34445663 gcactctttaaggattccaaaagaagaaattaatttataaaaaagtcaaatatttcgatttccaatgcattgattagacatgtttt 34445748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 127 - 194
Target Start/End: Complemental strand, 42850162 - 42850095
Alignment:
Q  127 aaatatttcgatttccgatgcattgattatacatattttcatgataagttaccatttaaaggccttaa 194  Q
    |||||||||||||| ||||||||| |||||| ||||||| ||||||| ||| |||||||||| |||||    
T  42850162 aaatatttcgattttcgatgcattaattatatatatttttatgataaattatcatttaaaggtcttaa 42850095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 155
Target Start/End: Original strand, 25095604 - 25095678
Alignment:
Q  81 cactctttaaggattctaaaagaagtaattattttatnnnnnnntcaaatatttcgatttccgatgcattgatta 155  Q
    ||||||||||||||||||||||||| |||||||| ||       ||||||||||| |||| ||||||||||||||    
T  25095604 cactctttaaggattctaaaagaagaaattatttcataaaaaagtcaaatatttcaattttcgatgcattgatta 25095678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 127 - 187
Target Start/End: Original strand, 44719222 - 44719282
Alignment:
Q  127 aaatatttcgatttccgatgcattgattatacatattttcatgataagttaccatttaaag 187  Q
    ||||||| ||||||| |||||| |||||| ||| ||||||||||||| |||||||||||||    
T  44719222 aaatattccgatttctgatgcaatgattacacacattttcatgataaattaccatttaaag 44719282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 194
Target Start/End: Original strand, 48947196 - 48947312
Alignment:
Q  78 gggcactctttaaggattctaaaagaagtaattattttatnnnnnnntcaaatatttcgatttccgatgcattgattatacatattttcatgataagtta 177  Q
    ||||| |||||||| || |||||  ||||||||||||| |       |||||  |||| |||||| ||||| |||||| ||| |||||||| | ||||||    
T  48947196 gggcattctttaagcatactaaattaagtaattattttttaaaaatgtcaaagttttcaatttccaatgcactgattacacaaattttcataaaaagtta 48947295  T
Q  178 ccatttaaaggccttaa 194  Q
    |||||||||| ||||||    
T  48947296 ccatttaaagtccttaa 48947312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 196
Target Start/End: Complemental strand, 12636414 - 12636303
Alignment:
Q  86 tttaaggattctaaaagaagtaattattttatnnnnnnntcaaatatttcgatttccgatgcattgattatacatattttcat-gataagttaccattta 184  Q
    ||||||||||| |||||||  ||| |||||||       |||| ||||||||||||| || ||||||||| ||||||||||||  | || |||| |||||    
T  12636414 tttaaggattccaaaagaataaataattttattaaaaagtcaagtatttcgatttcctatacattgattacacatattttcataaaaaaattactattta 12636315  T
Q  185 aaggccttaaag 196  Q
    |||| |||||||    
T  12636314 aaggtcttaaag 12636303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 168
Target Start/End: Complemental strand, 35438090 - 35438053
Alignment:
Q  131 atttcgatttccgatgcattgattatacatattttcat 168  Q
    |||||||||||| ||||||||| |||||||||||||||    
T  35438090 atttcgatttccaatgcattgaatatacatattttcat 35438053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 194
Target Start/End: Complemental strand, 13954241 - 13954129
Alignment:
Q  81 cactctttaaggattctaaaagaagtaattattttatnnnnnnntcaaatatttcgatttccgatgcattgattatacatattttcatgataagttacca 180  Q
    |||||||||||||||||| |||||| ||||| |||||       ||||| |||| ||||||| ||||| |||||| | | |||||||  |||| ||  ||    
T  13954241 cactctttaaggattctagaagaagaaattactttataaaaaaatcaaaaattttgatttccaatgca-tgattacatacattttcacaataaattttca 13954143  T
Q  181 tttaaaggccttaa 194  Q
    ||||||||||||||    
T  13954142 tttaaaggccttaa 13954129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 81 - 194
Target Start/End: Original strand, 8170026 - 8170139
Alignment:
Q  81 cactctttaaggattctaaaagaagtaattattttatnnnnnnntcaaatatttcgatttccgatgcattgattatacatattttcatgataagttacca 180  Q
    |||||||||||||||| |||||||| |||||||||||       |||||||||| |||||||||| |||||||||||||||| |||||||||||||||      
T  8170026 cactctttaaggattccaaaagaagaaattattttataaaaaagtcaaatattttgatttccgatacattgattatacatatgttcatgataagttactt 8170125  T
Q  181 tttaaaggccttaa 194  Q
    ||||||| ||||||    
T  8170126 tttaaagaccttaa 8170139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 82 - 194
Target Start/End: Complemental strand, 30413030 - 30412918
Alignment:
Q  82 actctttaaggattctaaaagaagtaattattttatnnnnnnntcaaatatttcgatttccgatgcattgattatacatattttcatgataagttaccat 181  Q
    ||||||||||||||  |||||||| || ||||||||       ||||||||||||||| |||||||||||||||||||||||||| |||||| |||| ||    
T  30413030 actctttaaggatttcaaaagaagaaactattttatgataaagtcaaatatttcgattcccgatgcattgattatacatattttcgtgataaattactat 30412931  T
Q  182 ttaaaggccttaa 194  Q
    |||||||||||||    
T  30412930 ttaaaggccttaa 30412918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 78 - 187
Target Start/End: Original strand, 47507602 - 47507711
Alignment:
Q  78 gggcactctttaaggattctaaaagaagtaattattttatnnnnnnntcaaatatttcgatttccgatgcattgattatacatattttcatgataagtta 177  Q
    |||||||||||||||||||||||||||| ||| |||||||       ||||| ||||| |||||||||| |||||||| |||| ||||||||| ||||||    
T  47507602 gggcactctttaaggattctaaaagaagaaataattttataaaaaaatcaaagatttcaatttccgatgtattgattacacattttttcatgagaagtta 47507701  T
Q  178 ccatttaaag 187  Q
    ||||||||||    
T  47507702 ccatttaaag 47507711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 84 - 194
Target Start/End: Original strand, 38452169 - 38452279
Alignment:
Q  84 tctttaaggattctaaaagaagtaattattttatnnnnnnntcaaatatttcgatttccgatgcattgattatacatattttcatgataagttaccattt 183  Q
    ||||||||||||  |||||||| |||||||||||       ||||||||||| ||||||||||||||| ||| |||||||||||| |||| ||| | |||    
T  38452169 tctttaaggatttaaaaagaagaaattattttataaaaaagtcaaatatttcaatttccgatgcattggttacacatattttcataataaattatctttt 38452268  T
Q  184 aaaggccttaa 194  Q
    |||||||||||    
T  38452269 aaaggccttaa 38452279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 78 - 175
Target Start/End: Original strand, 42493700 - 42493798
Alignment:
Q  78 gggcactctttaaggattctaaaagaagtaattatttt-atnnnnnnntcaaatatttcgatttccgatgcattgattatacatattttcatgataagt 175  Q
    ||||||||||||||||||| |||||||| ||||||||| ||       |||||||||| ||||| |||||||||||||| |||||||||||||||||||    
T  42493700 gggcactctttaaggattccaaaagaagaaattattttgataaaaaagtcaaatattttgattttcgatgcattgattacacatattttcatgataagt 42493798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 125 - 194
Target Start/End: Complemental strand, 46684623 - 46684554
Alignment:
Q  125 tcaaatatttcgatttccgatgcattgattatacatattttcatgataagttaccatttaaaggccttaa 194  Q
    |||||||||||||||| ||| |||||||||| | ||||||||||||||| ||||||||||||||||||||    
T  46684623 tcaaatatttcgattttcgacgcattgattacatatattttcatgataaattaccatttaaaggccttaa 46684554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 80 - 173
Target Start/End: Original strand, 2741167 - 2741260
Alignment:
Q  80 gcactctttaaggattctaaaagaagtaattattttatnnnnnnntcaaatatttcgatttccgatgcattgattatacatattttcatgataa 173  Q
    |||||||||||||||| ||||||||  |||||||||||       |||||||||| |||||||||||||||||||| |||||||||||| ||||    
T  2741167 gcactctttaaggattttaaaagaaaaaattattttattaaaaaatcaaatattttgatttccgatgcattgattacacatattttcataataa 2741260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 90 - 186
Target Start/End: Original strand, 48137787 - 48137883
Alignment:
Q  90 aggattctaaaagaagtaattattttatnnnnnnntcaaatatttcgatttccgatgcattgattatacatattttcatgataagttaccatttaaa 186  Q
    ||||||| |||||||| |||||||||||       |||||||||| ||||| |||||||||||||| ||||||||| ||||||| |||| |||||||    
T  48137787 aggattccaaaagaagaaattattttataaaaaagtcaaatattttgattttcgatgcattgattacacatatttttatgataaattactatttaaa 48137883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 83 - 196
Target Start/End: Complemental strand, 44391537 - 44391424
Alignment:
Q  83 ctctttaaggattctaaaagaagtaattattttatnnnnnnntcaaatatttcgatttccgatgcattgattatacatattttcatgataagttaccatt 182  Q
    |||||||| |||||||||||||  |||||||||||         ||||||||||||||   |||||||||||||| ||||||||||   |||||||||||    
T  44391537 ctctttaaagattctaaaagaataaattattttataaaaagtcaaaatatttcgatttttaatgcattgattatatatattttcatacaaagttaccatt 44391438  T
Q  183 taaaggccttaaag 196  Q
    |||||| |||||||    
T  44391437 taaaggtcttaaag 44391424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 125 - 194
Target Start/End: Complemental strand, 15034866 - 15034796
Alignment:
Q  125 tcaaatatttcgatttccgatgcatt-gattatacatattttcatgataagttaccatttaaaggccttaa 194  Q
    |||||||||||||| ||| ||||||| ||||| || ||||||||| |||||||||| ||||||||||||||    
T  15034866 tcaaatatttcgatatccaatgcatttgattacacgtattttcataataagttaccttttaaaggccttaa 15034796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 86 - 183
Target Start/End: Original strand, 2964049 - 2964146
Alignment:
Q  86 tttaaggattctaaaagaagtaattattttatnnnnnnntcaaatatttcgatttccgatgcattgattatacatattttcatgataagttaccattt 183  Q
    ||||| |||||||||||||| |||||||||||       | ||| |||| ||||| |||| ||||||||| ||||||||| |||||||||||| ||||    
T  2964049 tttaaagattctaaaagaagaaattattttataaaaaaattaaaaattttgattttcgatacattgattacacatatttttatgataagttactattt 2964146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 127 - 186
Target Start/End: Complemental strand, 47305592 - 47305532
Alignment:
Q  127 aaatatttcga-tttccgatgcattgattatacatattttcatgataagttaccatttaaa 186  Q
    ||||||||||| ||| |||| ||| ||||| ||||||||||||||||||||||||||||||    
T  47305592 aaatatttcgaattttcgatccatagattacacatattttcatgataagttaccatttaaa 47305532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 125 - 187
Target Start/End: Original strand, 11678038 - 11678100
Alignment:
Q  125 tcaaatatttcgatttccgatgcattgattatacatattttcatgataagttaccatttaaag 187  Q
    ||||||||||| |||||||||||||| |||| || ||||||||| |||| ||||| |||||||    
T  11678038 tcaaatatttcaatttccgatgcattaattacacgtattttcattataaattaccttttaaag 11678100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 125 - 194
Target Start/End: Complemental strand, 36285843 - 36285776
Alignment:
Q  125 tcaaatatttcgatttccgatgcattgattatacatattttcatgataagttaccatttaaaggccttaa 194  Q
    |||||||||| |||||||||| |||||||||  |||||||| ||||||||||||  |||||||| |||||    
T  36285843 tcaaatattttgatttccgatacattgatta--catatttttatgataagttacattttaaaggacttaa 36285776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 170
Target Start/End: Original strand, 5248093 - 5248179
Alignment:
Q  84 tctttaaggattctaaaagaagtaattattttatnnnnnnntcaaatatttcgatttccgatgcattgattatacatattttcatga 170  Q
    ||||||||||||  |||||||| |||||||||||       |||||||||||||||   ||||||||||||| ||||||||| ||||    
T  5248093 tctttaaggatttcaaaagaagaaattattttataaaaaagtcaaatatttcgattattgatgcattgattacacatatttttatga 5248179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 196
Target Start/End: Original strand, 27359398 - 27359468
Alignment:
Q  127 aaatatttcgatttccgatgcattgattatacatattttcat-gataagttaccatttaaaggccttaaag 196  Q
    |||||||||||||||| |||||||||||| || | |||||||  | ||||||| ||||||||| |||||||    
T  27359398 aaatatttcgatttccaatgcattgattacacttgttttcataaaaaagttactatttaaaggtcttaaag 27359468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 168
Target Start/End: Original strand, 15995930 - 15995971
Alignment:
Q  127 aaatatttcgatttccgatgcattgattatacatattttcat 168  Q
    |||||||||||||| | |||||||||||| ||||||||||||    
T  15995930 aaatatttcgattttcaatgcattgattacacatattttcat 15995971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 78 - 194
Target Start/End: Complemental strand, 18399274 - 18399157
Alignment:
Q  78 gggcactctttaaggattctaaaagaagtaattatttt-atnnnnnnntcaaatatttcgatttccgatgcattgattatacatattttcatgataagtt 176  Q
    ||||||||||||||||||| |||||||| ||| ||||| ||       ||||||||||||||||||||||||||||||| |||  |||||||||||||||    
T  18399274 gggcactctttaaggattccaaaagaagaaataatttttataaaaaagtcaaatatttcgatttccgatgcattgattacacaacttttcatgataagtt 18399175  T
Q  177 accatttaaaggccttaa 194  Q
    |||||||||| |||||||    
T  18399174 accatttaaaagccttaa 18399157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 79 - 194
Target Start/End: Complemental strand, 52340235 - 52340119
Alignment:
Q  79 ggcactctttaaggattctaaaagaagtaattattttatnnnnnnn-tcaaatatttcgatttccgatgcattgattatacatattttcatgataagtta 177  Q
    |||||||||||||||||| ||| |||| ||| |||||||        ||||| ||||||||||||||||||||||||| ||||||||| |||||||||||    
T  52340235 ggcactctttaaggattccaaaggaagaaataattttataaaaaaaatcaaagatttcgatttccgatgcattgattacacatatttttatgataagtta 52340136  T
Q  178 ccatttaaaggccttaa 194  Q
    |||||||||||||||||    
T  52340135 ccatttaaaggccttaa 52340119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 78 - 194
Target Start/End: Original strand, 34758921 - 34759037
Alignment:
Q  78 gggcactctttaaggattctaaaagaagtaattattttatnnnnnnntcaaatatttcgatttccgatgcattgattatacatattttcatgataagtta 177  Q
    ||||||||||||||||||| ||||||||||||||||||||       | ||||||||||| | | ||||||||||||| | |||||| ||||||||||||    
T  34758921 gggcactctttaaggattcaaaaagaagtaattattttataaaaaagtgaaatatttcgactcctgatgcattgattacatatatttccatgataagtta 34759020  T
Q  178 ccatttaaaggccttaa 194  Q
    | |||||||| ||||||    
T  34759021 ctatttaaagcccttaa 34759037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 7754831 - 7754772
Alignment:
Q  131 atttcgatttccgatgcattgattatacatattttcatgataagttaccatttaaaggcc 190  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||    
T  7754831 atttcgatttccgatgcattgattagacatattttcatgataagttactatttaaaggcc 7754772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 73 - 194
Target Start/End: Original strand, 27968185 - 27968306
Alignment:
Q  73 gccccgggcactctttaaggattctaaaagaagtaattattttatnnnnnnntcaaatatttcgatttccgatgcatt-gattatacatattttcatgat 171  Q
    ||||||| |||| ||||||||||| |||||||| ||| |||| ||       ||||| |||| ||||| ||||||||| ||||| |||||||||||||||    
T  27968185 gccccggacactttttaaggattccaaaagaagaaataattt-ataaaaaagtcaaagattttgattttcgatgcatttgattacacatattttcatgat 27968283  T
Q  172 aagttaccatttaaaggccttaa 194  Q
    |||||||||||||||||||||||    
T  27968284 aagttaccatttaaaggccttaa 27968306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 82 - 194
Target Start/End: Complemental strand, 30687189 - 30687077
Alignment:
Q  82 actctttaaggattctaaaagaagtaattattttatnnnnnnntcaaatatttcgatttccgatgcattgattatacatattttcatgataagttaccat 181  Q
    |||||||||||||||||||||||| |||||| ||||       ||||| | || |||||  ||||||||||||| ||||||||||||||||| ||| |||    
T  30687189 actctttaaggattctaaaagaagaaattatgttataaaaaaatcaaagagtttgatttttgatgcattgattacacatattttcatgataaattatcat 30687090  T
Q  182 ttaaaggccttaa 194  Q
    |||||| ||||||    
T  30687089 ttaaagaccttaa 30687077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 80 - 194
Target Start/End: Original strand, 4033025 - 4033138
Alignment:
Q  80 gcactctttaaggattctaaaagaagtaattattttatnnnnnnntcaaatatttcgatttccgatgcattgattatacatattttcatgataagttacc 179  Q
    ||||| |||||||||||||||| ||| |||||||||||       ||||| |||||||||||||||||| |||||| ||| ||||||||||||| ||  |    
T  4033025 gcactttttaaggattctaaaaaaagaaattattttataaaaaaatcaaagatttcgatttccgatgca-tgattacacacattttcatgataaatttac 4033123  T
Q  180 atttaaaggccttaa 194  Q
    ||||||||| |||||    
T  4033124 atttaaaggacttaa 4033138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 80 - 194
Target Start/End: Complemental strand, 54912110 - 54911996
Alignment:
Q  80 gcactctttaaggattctaaaagaagtaattattttatnnnnnnntcaaatatttcgatttccgatgcattgattatacatattttcatgataagttacc 179  Q
    |||||||||||| |||| |||||||  || ||||||||       | ||||||||| ||||| ||||||||||||| ||||||||||||||||||||  |    
T  54912110 gcactctttaagaattccaaaagaataaactattttataacaaagttaaatatttcaatttcggatgcattgattacacatattttcatgataagttgtc 54912011  T
Q  180 atttaaaggccttaa 194  Q
    ||||| |||||||||    
T  54912010 atttataggccttaa 54911996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 82 - 188
Target Start/End: Complemental strand, 38705060 - 38704954
Alignment:
Q  82 actctttaaggattctaaaagaagtaattattttatnnnnnnntcaaatatttcgatttccgatgcattgattatacatattttcatgataagttaccat 181  Q
    |||||||||| |||| |||||||  |||||||||||       |||||||||| |||||||||||||||||||| ||||||||  ||||||| ||  |||    
T  38705060 actctttaagaattcaaaaagaaaaaattattttataaaaatgtcaaatattttgatttccgatgcattgattacacatatttgtatgataaattgtcat 38704961  T
Q  182 ttaaagg 188  Q
    |||||||    
T  38704960 ttaaagg 38704954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 196
Target Start/End: Complemental strand, 25548310 - 25548194
Alignment:
Q  81 cactctttaaggattctaaaagaagtaattattttatnnnnnnn-tcaaatatttcgatttccgatgcattgattatacatattttcatgataagttacc 179  Q
    ||||||||||||| ||||||||||| || ||||||||        | ||||||||| |||||  |||||||||||| |||||||||||| | || ||| |    
T  25548310 cactctttaaggactctaaaagaagaaaatattttataaaaaaagttaaatatttcaatttctaatgcattgattacacatattttcataaaaatttatc 25548211  T
Q  180 atttaaaggccttaaag 196  Q
    ||||||||| |||||||    
T  25548210 atttaaaggtcttaaag 25548194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 186
Target Start/End: Original strand, 38388704 - 38388812
Alignment:
Q  78 gggcactctttaaggattctaaaagaagtaattattttatnnnnnnntcaaatatttcgatttccgatgcattgattatacatattttcatgataagtta 177  Q
    ||||||| ||||| |||||||||||||| ||||| |||||       |||||||||| ||||| |  ||||||||||| ||||||||| || | || |||    
T  38388704 gggcactatttaaagattctaaaagaagaaattaatttataaaaaagtcaaatattttgattttcattgcattgattacacatatttttataaaaattta 38388803  T
Q  178 ccatttaaa 186  Q
    | |||||||    
T  38388804 ctatttaaa 38388812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 195
Target Start/End: Complemental strand, 19898169 - 19898099
Alignment:
Q  125 tcaaatatttcgatttccgatgcattgattatacatattttcatgataagttaccatttaaaggccttaaa 195  Q
    ||||||||||| |||| | |||||||||||| |||||||||||| | || |||| || |||||| ||||||    
T  19898169 tcaaatatttcaattttcaatgcattgattacacatattttcataaaaatttacaatgtaaaggtcttaaa 19898099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 81 - 194
Target Start/End: Complemental strand, 18053128 - 18053016
Alignment:
Q  81 cactctttaaggattctaaaagaagtaattattttatnnnnnnntcaaatatttcgatttccgatgcattgattatacatattttcatgataagttacca 180  Q
    |||||||||||||||  |||||||| |||||||||||       |||||||||| |||||||||||||||||||||||||| ||||||||||| |||||     
T  18053128 cactctttaaggatttcaaaagaagaaattattttataaaaaagtcaaatattttgatttccgatgcattgattatacatactttcatgataaattacc- 18053030  T
Q  181 tttaaaggccttaa 194  Q
    ||||||||||||||    
T  18053029 tttaaaggccttaa 18053016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 78 - 194
Target Start/End: Complemental strand, 8773787 - 8773671
Alignment:
Q  78 gggcactctttaaggattctaaaagaagtaattattttatnnnnnnntcaaatatttcgatttccgatgcattgattatacatattttcatgataagtta 177  Q
    ||||||||||||| |||||||||||||| |||||||||||       |||||||||| |||||| ||||||||||||| | ||||||||||| |||||||    
T  8773787 gggcactctttaaagattctaaaagaagaaattattttataaaaaagtcaaatattttgatttctgatgcattgattacatatattttcatgttaagtta 8773688  T
Q  178 ccatttaaaggccttaa 194  Q
    || ||||||| ||||||    
T  8773687 ccctttaaagaccttaa 8773671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 81 - 194
Target Start/End: Original strand, 8789851 - 8789964
Alignment:
Q  81 cactctttaaggattctaaaagaagtaattattttatnnnnnnntcaaatatttcgatttccgatgcattgattatacatattttcatgataagttacca 180  Q
    |||||||||| |||||||||||||| |||||||||||       | |||||||| |||||| ||||||||||||| ||||||||||||| |||||||||     
T  8789851 cactctttaaagattctaaaagaagaaattattttataaaaaagttaaatattttgatttctgatgcattgattacacatattttcatgttaagttaccc 8789950  T
Q  181 tttaaaggccttaa 194  Q
    ||||||| ||||||    
T  8789951 tttaaagaccttaa 8789964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 81 - 186
Target Start/End: Complemental strand, 20683108 - 20683003
Alignment:
Q  81 cactctttaaggattctaaaagaagtaattattttatnnnnnnntcaaatatttcgatttccgatgcattgattatacatattttcatgataagttacca 180  Q
    |||||||||||||||| |||||||| ||  |||||||       ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  20683108 cactctttaaggattccaaaagaagaaaagattttataaaaaaatcaaatatttcgatttccgatgcattgattacacatatttttatgataagttacca 20683009  T
Q  181 tttaaa 186  Q
    | ||||    
T  20683008 tataaa 20683003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 81 - 194
Target Start/End: Complemental strand, 44941192 - 44941079
Alignment:
Q  81 cactctttaaggattctaaaagaagtaattattttatnnnnnnntcaaatatttcgatttccgatgcattgattatacatattttcatgataagttacca 180  Q
    ||||||||||||||||||||||||| || ||| ||||       | ||| ||||||||||||||||||||||||| | |||||||| |||||| ||||||    
T  44941192 cactctttaaggattctaaaagaagaaagtatgttataaaaaagttaaagatttcgatttccgatgcattgattacatatattttcctgataaattacca 44941093  T
Q  181 tttaaaggccttaa 194  Q
    ||||||||||||||    
T  44941092 tttaaaggccttaa 44941079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 81 - 187
Target Start/End: Complemental strand, 4238436 - 4238331
Alignment:
Q  81 cactctttaaggattctaaaagaagtaattattttatnnnnnnntcaaatatttcgatttccgatgcattgattatacatattttcatgataagttacca 180  Q
    |||||||||||||||| |||||||| |||||||||||       |||||||||||||||| |||||||||||||| |||||||||||| |||||||| |     
T  4238436 cactctttaaggattcaaaaagaagaaattattttataaaaaaatcaaatatttcgattttcgatgcattgattacacatattttcat-ataagttatct 4238338  T
Q  181 tttaaag 187  Q
    |||||||    
T  4238337 tttaaag 4238331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 79 - 194
Target Start/End: Complemental strand, 42945127 - 42945012
Alignment:
Q  79 ggcactctttaaggattctaaaagaagtaattattttatnnnnnnntcaaatatttcgatttccgatgcattgattatacatattttcatgataagttac 178  Q
    |||||| |||||||||| ||||||||   ||||||||||       ||||||||||||||||||  ||||||||||| ||||||||| ||||||| ||||    
T  42945127 ggcactttttaaggattttaaaagaaaacattattttattaaaaactcaaatatttcgatttccagtgcattgattacacatatttttatgataatttac 42945028  T
Q  179 catttaaaggccttaa 194  Q
     |||||||||||||||    
T  42945027 tatttaaaggccttaa 42945012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 80 - 194
Target Start/End: Complemental strand, 34546380 - 34546266
Alignment:
Q  80 gcactctttaaggattctaaaagaagtaattattttatnnnnnnntcaaatatttcgatttccgatgcattgattatacatattttcatgataagttacc 179  Q
    ||||||||| ||||||| ||| |||| ||||| |||||       ||||||| ||||||||| ||||||||||||| ||| ||||||||||||||||| |    
T  34546380 gcactctttgaggattccaaatgaagaaattaatttataaaaaagtcaaatacttcgatttctgatgcattgattacacacattttcatgataagttatc 34546281  T
Q  180 atttaaaggccttaa 194  Q
    |||||| || |||||    
T  34546280 atttaatggtcttaa 34546266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 84 - 195
Target Start/End: Original strand, 35228732 - 35228843
Alignment:
Q  84 tctttaaggattctaaaagaagtaattattttatnnnnnnntcaaatatttcgatttccgatgcattgattatacatattttcatgataagttaccattt 183  Q
    ||||||||||||  |||||||| ||||||||| |       |||||||||||||||||  ||||||| |||| ||||||||||||   |||| | |||||    
T  35228732 tctttaaggatttcaaaagaagaaattattttctaaaaagatcaaatatttcgatttctaatgcatttattacacatattttcatataaagtaatcattt 35228831  T
Q  184 aaaggccttaaa 195  Q
    ||||| ||||||    
T  35228832 aaaggtcttaaa 35228843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 115
Target Start/End: Complemental strand, 42924529 - 42924494
Alignment:
Q  80 gcactctttaaggattctaaaagaagtaattatttt 115  Q
    |||||||||||| |||||||||||||||||||||||    
T  42924529 gcactctttaagcattctaaaagaagtaattatttt 42924494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 186
Target Start/End: Original strand, 7271819 - 7271880
Alignment:
Q  125 tcaaatatttcgatttccgatgcattgattatacatattttcatgataagttaccatttaaa 186  Q
    ||||||||||  |||||| |||||||||||| | |||||||||| | |||||| ||||||||    
T  7271819 tcaaatatttttatttccaatgcattgattacatatattttcataaaaagttatcatttaaa 7271880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 78 - 194
Target Start/End: Complemental strand, 12383132 - 12383016
Alignment:
Q  78 gggcactctttaaggattctaaaagaagtaattattttatnnnnnnntcaaatatttcgatttccgatgcattgattatacatattttcatgataagtta 177  Q
    |||||||||||||| |||  ||||| || |||||||||||       | |||||||| |||||||||||||||||||||||||||||| ||||||| |||    
T  12383132 gggcactctttaagaatttcaaaaggagaaattattttataaaaaagttaaatattttgatttccgatgcattgattatacatatttttatgataaatta 12383033  T
Q  178 ccatttaaaggccttaa 194  Q
    | ||||||||| |||||    
T  12383032 ctatttaaaggacttaa 12383016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 127 - 183
Target Start/End: Original strand, 35241453 - 35241509
Alignment:
Q  127 aaatatttcgatttccgatgcattgattatacatattttcatgataagttaccattt 183  Q
    |||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||    
T  35241453 aaatattttgatttctgatgcattgattatacatatttttatgataagttaccattt 35241509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 125 - 194
Target Start/End: Complemental strand, 22695549 - 22695479
Alignment:
Q  125 tcaaatatttcgatttccgatgcattgattatacata-ttttcatgataagttaccatttaaaggccttaa 194  Q
    ||||||||||| |||| |||||||||||||| ||||| |||| || | ||||||||||||||| |||||||    
T  22695549 tcaaatatttcaattttcgatgcattgattacacatatttttaataaaaagttaccatttaaaagccttaa 22695479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 178
Target Start/End: Original strand, 8176324 - 8176418
Alignment:
Q  84 tctttaaggattctaaaagaagtaattattttatnnnnnnntcaaatatttcgatttccgatgcattgattatacatattttcatgataagttac 178  Q
    |||||||||||||||||||||| ||| | ||| |       ||||| ||||| |||| ||||||||| |||| |||||||||||| |||||||||    
T  8176324 tctttaaggattctaaaagaagaaataaatttttaaaaaagtcaaaaatttcaattttcgatgcattaattacacatattttcataataagttac 8176418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 117
Target Start/End: Complemental strand, 22696048 - 22696011
Alignment:
Q  80 gcactctttaaggattctaaaagaagtaattattttat 117  Q
    ||||||||||||||||| |||||||| |||||||||||    
T  22696048 gcactctttaaggattccaaaagaagaaattattttat 22696011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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