View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11582_high_56 (Length: 240)
Name: NF11582_high_56
Description: NF11582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11582_high_56 |
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Alignment Details
Target: chr3 (Bit Score: 157; Significance: 1e-83; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 40 - 196
Target Start/End: Complemental strand, 50911838 - 50911682
Alignment:
| Q |
40 |
acattttgtacaaagtcatgatttagatttgtaaagaatttttcccctttcctgcctttggaatgggttagcattgtccatctgaaggacaatttcagga |
139 |
Q |
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| T |
50911838 |
acattttgtacaaagtcatgatttagatttgtaaagaatttttcccctttcctgcctttggaatgggttagcattgtccatctgaaggacaatttcagga |
50911739 |
T |
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| Q |
140 |
agagattgtatgttattatttactttatttccaattctaatcataatgacttgatat |
196 |
Q |
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| T |
50911738 |
agagattgtatgttattatttactttatttccaattctaatcataatgacttgatat |
50911682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 53 - 189
Target Start/End: Complemental strand, 38031226 - 38031094
Alignment:
| Q |
53 |
agtcatgatttagatttgtaaagaatttttcccctttcc-tgcctttggaatgggttagcattgtccatctgaaggacaatttcaggaagagattgtatg |
151 |
Q |
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|||||||||||||||||||||||| ||||| ||||| | | |||||||||||||||||||||||||||||||| ||||| |||||||||||||||| || |
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| T |
38031226 |
agtcatgatttagatttgtaaagattttttttccttttcatacctttggaatgggttagcattgtccatctgaatgacaaattcaggaagagattgtttg |
38031127 |
T |
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| Q |
152 |
ttattatttactttatttccaattctaatcataatgac |
189 |
Q |
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| T |
38031126 |
ttatta-----tttatttctaattctaatcataatgac |
38031094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 53 - 189
Target Start/End: Complemental strand, 38024774 - 38024642
Alignment:
| Q |
53 |
agtcatgatttagatttgtaaagaatttttccccttt-cctgcctttggaatgggttagcattgtccatctgaaggacaatttcaggaagagattgtatg |
151 |
Q |
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| T |
38024774 |
agtcatgatttagatttgtaaaattttttttcccttttcctaccattggaatgggttagccttgtccatctgaaagacaaattcagcaagagattgtttg |
38024675 |
T |
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| Q |
152 |
ttattatttactttatttccaattctaatcataatgac |
189 |
Q |
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| T |
38024674 |
ttgttatttc-----tttctaattctaatcataatgac |
38024642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 196 - 240
Target Start/End: Complemental strand, 50911645 - 50911601
Alignment:
| Q |
196 |
ttataagttacaaaactaatgattgtttgggataaaaataagtat |
240 |
Q |
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| T |
50911645 |
ttataagttacaaaactaatgattgtttgggataaaaatatgtat |
50911601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 136
Target Start/End: Complemental strand, 38036685 - 38036610
Alignment:
| Q |
62 |
ttagatttgtaaagaattt-ttcccctttcctgcctttggaatgggttagcattgtccatctgaaggacaatttca |
136 |
Q |
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| T |
38036685 |
ttagatttgtaaagattttatttcattttcctacctttggaatgtgttagaattgtccatctgaatgacaaattca |
38036610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 236
Target Start/End: Complemental strand, 38031045 - 38031008
Alignment:
| Q |
199 |
taagttacaaaactaatgattgtttgggataaaaataa |
236 |
Q |
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| T |
38031045 |
taagttacaaaactaatgattacttgggataaaaataa |
38031008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 53 - 189
Target Start/End: Complemental strand, 21607195 - 21607063
Alignment:
| Q |
53 |
agtcatgatttagatttgtaaagaatttttcccctttcc-tgcctttggaatgggttagcattgtccatctgaaggacaatttcaggaagagattgtatg |
151 |
Q |
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|||||||||||||||||||||||| ||||| ||||| | | |||||||||||||||||||||||||||||||| ||||| |||||||||||||||| || |
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| T |
21607195 |
agtcatgatttagatttgtaaagattttttttccttttcatacctttggaatgggttagcattgtccatctgaatgacaaattcaggaagagattgtttg |
21607096 |
T |
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| Q |
152 |
ttattatttactttatttccaattctaatcataatgac |
189 |
Q |
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|||||| |||||||| |||||||||||||||||| |
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| T |
21607095 |
ttatta-----tttatttctaattctaatcataatgac |
21607063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 21607020 - 21606980
Alignment:
| Q |
196 |
ttataagttacaaaactaatgattgtttgggataaaaataa |
236 |
Q |
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| T |
21607020 |
ttataagttacaaaactaatgattacttgggataaaaataa |
21606980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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