View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11582_high_6 (Length: 658)

Name: NF11582_high_6
Description: NF11582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11582_high_6
NF11582_high_6
[»] chr8 (1 HSPs)
chr8 (11-641)||(8804872-8805502)


Alignment Details
Target: chr8 (Bit Score: 603; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 603; E-Value: 0
Query Start/End: Original strand, 11 - 641
Target Start/End: Complemental strand, 8805502 - 8804872
Alignment:
Q  11 cataggacaaaagcttggtttacattggtataggagattgaatattgcaacagaaatagctagtactattgcatcgttacattatgataaatctcctcca 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  8805502 cataggacaaaagcttggtttacattggtataggagattgaatattgcaacagaaatagctagtactattgcattgttacattatgataaatctcctcca 8805403  T
Q  111 atattccatcataacctaaagtctagttgcatcttcctaggtgatgatttttctgtcaagattgcaggatttggaatacataattctgatgttaataatt 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8805402 atattccatcataacctaaagtctagttgcatcttcctaggtgatgatttttctgtcaagattgcaggatttggaatacataattctgatgttaataatt 8805303  T
Q  211 atgattacaagaattgtgaaactcgcgaacgctttcggttgtgcaaaaatgatgtctatgacataggtttgttgctactcgagattatctacggaacaaa 310  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  8805302 atgattacaagaattgtgaaactcgcgaacactttcgcttgtgcaaaaatgatgtctacgacataggtttgttgctactcgagattatctacggaacaaa 8805203  T
Q  311 tcagttggactcacctacattagccttgaagaaaattagggatggaaagatcgaagaaattgtcgatccacttcttaattattacgaacaaccgcgtcat 410  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8805202 tcaattggactcacctacattagccttgaagaaaattagggatggaaagatcgaagaaattgtcgatccacttcttaattattacgaacaaccgcgtcat 8805103  T
Q  411 tgtcaagaacagattcagatcattgctgaccttgccacaagatgttttctgtttagtggagatggaaagatgggaatgattgatgttgctagggaattgg 510  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8805102 tgtcaagaacagattcagatcattgctgaccttgccacaagatgttttctgtttagtggagatggaaagatgggaatgattgatgttgctagggaattgg 8805003  T
Q  511 ttcatttgacaaaagatagtgttgatggaggaaatgtgaaaggaattgttcttgaagaaacattctcaaattctagtcttcttcaaatgatatctttgtc 610  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8805002 ttcatttgacaaaagatagtgttgatggaggaaatgtgaaaggaattgctcttgaagaaacattctcaaattctagtcttcttcaaatgatatctttgtc 8804903  T
Q  611 tcctgattctaagaatgttccttgaatttca 641  Q
    ||||||||||| |||||||||||||||||||    
T  8804902 tcctgattctatgaatgttccttgaatttca 8804872  T

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