View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11582_high_8 (Length: 622)
Name: NF11582_high_8
Description: NF11582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11582_high_8 |
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Alignment Details
Target: chr6 (Bit Score: 473; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 13 - 518
Target Start/End: Original strand, 1321773 - 1322280
Alignment:
| Q |
13 |
agatgaaactaggagaaatacaaataaaacatacgatgtcaaatgtaatatctatattttaatgttcaaataacataattgtactttaatatttcaacca |
112 |
Q |
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| T |
1321773 |
agataaaactaggagaaatacagataaaacatacgatgtcagatgtaatatctatattttaatgttcaaataacataattgtactttaatatttcaacca |
1321872 |
T |
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| Q |
113 |
ctttggggttataacaatttacattttgtgtgtgtaaataagatgatagatttgtgaaggtaaattgagaaaacatagaacaaaaggtaaatgacaagaa |
212 |
Q |
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| T |
1321873 |
cttgggggttataacaatttacattttgtgtgtgtaaataagatgatagatttgtgaaggtaaattgagaaaacatagaacaaaaggtaaatgacaagaa |
1321972 |
T |
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| Q |
213 |
caaggcaatccaaagggaccttaaggttatggtcattctcttgtagttaatctccaacattcaaacctcatctaaaaagataggaatgaagctctcctta |
312 |
Q |
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| T |
1321973 |
gaaggcaatccaaagggaccttaaggttatggtcattctcttgtagttaatctccaacattcaaacctcatctaaaaagataggaatgaagctctcctta |
1322072 |
T |
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| Q |
313 |
gcttaactttcgttttcattatctacctttggttacattaaaatggggatacccaattggtcatggaacacatcatc--atagctatatagcattgtgat |
410 |
Q |
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| T |
1322073 |
gcttaactttcgttttcattatctacctttggttacattaaaatggggatacccaattggtcatggaacacatcatcatatagctatatagcattgtgat |
1322172 |
T |
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| Q |
411 |
ttgagtcttcattgtcacaatgtctacctcttccataaacggctttagtctctcttctttgtcccctaccaaaacttctattaaaaaagttacattgaga |
510 |
Q |
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| T |
1322173 |
ttgagtcttcattgtcacaatgtctacctcttccataaacggctttagtctctcttctttgtcccctacaaaaacttctattaaaaaagttacattgaga |
1322272 |
T |
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| Q |
511 |
cctattgt |
518 |
Q |
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| T |
1322273 |
cctattgt |
1322280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 577 - 610
Target Start/End: Original strand, 1322339 - 1322372
Alignment:
| Q |
577 |
attcaagacaagcctgtttttgcttcatcttctt |
610 |
Q |
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| T |
1322339 |
attcaagacaagcctgtttttgcttcatcttctt |
1322372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 58 - 90
Target Start/End: Complemental strand, 47464521 - 47464489
Alignment:
| Q |
58 |
taatatctatattttaatgttcaaataacataa |
90 |
Q |
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| T |
47464521 |
taatgtctatattttaatgttcaaataacataa |
47464489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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