View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11582_low_1 (Length: 1033)
Name: NF11582_low_1
Description: NF11582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11582_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 435; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 19 - 492
Target Start/End: Original strand, 27835919 - 27836392
Alignment:
| Q |
19 |
gaagagcagcattacactctgatggtccattctgccctcaaaaagaagaacaaatttggtgatagggaaatgttagaaatggtttgaactcctttatgtg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27835919 |
gaagagcagcattacactctgatggtccattctgccctcaaaaagaagaacaaatttggtgatagggaaatgttagaaatggtttgaactcctttatgtg |
27836018 |
T |
|
| Q |
119 |
tttagaacctataatttattcgaattttgtttttagtctctataccaaccctttcggtccttaggaaagtgcattcttttagttcgtagggactaaaaat |
218 |
Q |
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| T |
27836019 |
tttagaacctacaatttatttgaattttgtttttagtctctataccaaccctt-cggtccttaggaaagtgcattctgttagttcgtagggactaaaaat |
27836117 |
T |
|
| Q |
219 |
gtgtagttttgtagtttatgggactaaaaagtaggtatagagactaaaaaatatgtaattttatagagattgaaaacatatttaaccacaattatgcaaa |
318 |
Q |
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| T |
27836118 |
gtgtagttttgtagtttatgggactaaaaagtaggtatagagactaaaaaatatgtaattttatagagattgaaaacatatttaaccacaattatgcaaa |
27836217 |
T |
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| Q |
319 |
taccttcatcataggtacaagattggcaatgttacgtatcataaagacttcaccaggttggaatcctaatatgttagaggggcatacccttgaatctgca |
418 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
27836218 |
taccttcatcataggcacaagattggcaatgttacgtatcataaagacttcaccaggttggaatcctaatatgttagaggggcacacccttgaatctgca |
27836317 |
T |
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| Q |
419 |
caagcaattaccataaactgtacttggaattattagttattagaacaa-taaagtctcagtttaattaaaatatg |
492 |
Q |
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| T |
27836318 |
caagcaattaccataaactgtacttggatttattagttattagaacaattaaagtctcagtttaattaaaatatg |
27836392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 496 - 1024
Target Start/End: Original strand, 27836429 - 27836955
Alignment:
| Q |
496 |
caaaatgtgttgttgtggagattatttgtgaaaatgatttgatagtatagggnnnnnnnttgaataaatggacttctgaaatctatttgttaatcacctt |
595 |
Q |
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| T |
27836429 |
caaaatgtgt-gttgtggagattatttgtgaagatgatttgatagtatagggaaaaaaattgaataaatggacttctgaaatctatttgttaatcacctt |
27836527 |
T |
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| Q |
596 |
tggatattgagcttcagcaagagattcataatgctccaactctttcctgtctaaaagaaaatagtttataagatacttggctaacaaaaaggaacaaatt |
695 |
Q |
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| T |
27836528 |
tggatattgagcttcagcaagagattcataatggtccaactctttcctgtctaaaagaaaatagtttataagatacttggctaacaaaaaggaacaaatt |
27836627 |
T |
|
| Q |
696 |
tttgcaaagttgaaaattgaaaaaatgtgcaacttaaatcttacatgtacttttggttcttgaaatttaaaaacctttgtttcatcaaaccaaataaatt |
795 |
Q |
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| T |
27836628 |
tttgcaaagttgaaaattggaaaaatgtgcaacttaaatcttacatgtacttttggttcttgaaatttaaaaacctttgtttcatcaaaccaaataaatt |
27836727 |
T |
|
| Q |
796 |
taggtagccatcaatttcagtcatattccctacatcaagacttttattttcattaccaagatcctctggctgtttctccctacagttaaagaagacaaat |
895 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
27836728 |
taggtagccatcaatttcagtcatattccctacatcaagacctttattttcattaccaatatcctctggctgtttctccctacagttaaagaagacaaat |
27836827 |
T |
|
| Q |
896 |
catataattgtgatcaaatgttagttataaataggttaatagtgttttaccccttataaaatannnnnnnnaagtagcaaacaaatgcatgaaacttttc |
995 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||| |||| | ||| ||||||| || |||||||||||||||||||||||||| |
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| T |
27836828 |
catataattgtgatcaaatattagttataaataggttaatagtgctttatcacttgtaaaatattttttttaaatagcaaacaaatgcatgaaacttttc |
27836927 |
T |
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| Q |
996 |
taagtgaagatataatttggattgatgtc |
1024 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
27836928 |
-aagtgaagatataatttggattgatgtc |
27836955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 374 - 447
Target Start/End: Original strand, 1939582 - 1939655
Alignment:
| Q |
374 |
ggttggaatcctaatatgttagaggggcatacccttgaatctgcacaagcaattaccataaactgtacttggaa |
447 |
Q |
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||||| ||||| || || || |||||||||||||| ||||||||||| ||||| ||||| |||||| ||||||| |
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| T |
1939582 |
ggttgaaatcccaaaatattggaggggcataccctggaatctgcacaggcaataaccatgaactgttcttggaa |
1939655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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