View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11582_low_10 (Length: 602)

Name: NF11582_low_10
Description: NF11582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11582_low_10
NF11582_low_10
[»] scaffold0150 (3 HSPs)
scaffold0150 (18-548)||(8800-9330)
scaffold0150 (186-288)||(17956-18058)
scaffold0150 (545-592)||(8422-8469)
[»] chr8 (5 HSPs)
chr8 (18-538)||(17019957-17020459)
chr8 (18-538)||(17550394-17550896)
chr8 (186-288)||(17017015-17017117)
chr8 (186-288)||(17547452-17547554)
chr8 (186-380)||(17522266-17522460)
[»] chr1 (4 HSPs)
chr1 (119-483)||(52133655-52134022)
chr1 (168-380)||(52145645-52145854)
chr1 (215-380)||(52142127-52142292)
chr1 (219-283)||(52150221-52150285)


Alignment Details
Target: scaffold0150 (Bit Score: 515; Significance: 0; HSPs: 3)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 18 - 548
Target Start/End: Complemental strand, 9330 - 8800
Alignment:
Q  18 aattcacagttgccacattcccatgctcgtaataataagtaccaattaatttattttacagactttccagtttctatatattccatctacgttattccca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9330 aattcacagttgccacattcccatgctcgtaataataagtaccaattaatttattttacagactttccagtttctatatattccatctacgttattccca 9231  T
Q  118 tgaatcggcctatataaatcaataatacagcttcttggtttgttatcattccaatatggcttcttctacttcttccaccaacaaagtgaccctcaaactt 217  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9230 tgaatcggcctatataattcaataatacagcttcttggtttgttatcattccaatatggcttcttctacttcttccaccaacaaagtgaccctcaaactt 9131  T
Q  218 ctcattgacaccatgaatgagaaagttctgtttgctgaagcatcaaaaactgtgatagattttcttttcaatctgcttcgtttgccagttggtactgttg 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9130 ctcattgacaccatgaatgagaaagttctgtttgctgaagcatcaaaagctgtgatagattttcttttcaatctgcttcgtttgccagttggtactgttg 9031  T
Q  318 ttaaacttttaaacaagaatggcatggttggtagcattggtaatctctataacagtgttgaaactttgtccgataattatatggaacaagaacaaactaa 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9030 ttaaacttttaaacaagaatggcatggttggtagcattggtaatctctataacagtgttgaaactttgtccgataattatatggaacaagaacaaactaa 8931  T
Q  418 agaggttttgctgaaccccagagctcctatctattcaactgaaattgcaggccttcttcccgcaaacaataccgatgccaacaacttgggaggtcgagga 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8930 agaggttttgctgaaccccagagctcctatctattcaactgaaattgcaggccttcttcccgcaaacaataccgatgccaacaacttgggaggtcgagga 8831  T
Q  518 aatttattctatagatgcggaggctgctgta 548  Q
    |||||||||||||||||| ||||| ||||||    
T  8830 aatttattctatagatgcagaggcggctgta 8800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0150; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 186 - 288
Target Start/End: Original strand, 17956 - 18058
Alignment:
Q  186 cttcttccaccaacaaagtgaccctcaaacttctcattgacaccatgaatgagaaagttctgtttgctgaagcatcaaaaactgtgatagattttctttt 285  Q
    |||||||||||| |||| |||||||||||||||| |||||||| | |||||| | |||||| |||||||||||||| ||| | || ||||| ||||||||    
T  17956 cttcttccaccaccaaactgaccctcaaacttcttattgacacaaagaatgaaagagttctctttgctgaagcatctaaacccgttatagactttctttt 18055  T
Q  286 caa 288  Q
    |||    
T  18056 caa 18058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0150; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 545 - 592
Target Start/End: Complemental strand, 8469 - 8422
Alignment:
Q  545 tgtatttttaagttttaacattttgttttattcacacattggcctttg 592  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  8469 tgtatttttaagttttaacattttgttttattcacacattggcctttg 8422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 384; Significance: 0; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 18 - 538
Target Start/End: Original strand, 17019957 - 17020459
Alignment:
Q  18 aattcacagttgccacattcccatgctcgtaataataagtaccaattaatt----tattttacagactttccagtttctatatattccatctacgttatt 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||| |                     ||||||||    
T  17019957 aattcacagttgccacattcccatgctcgtaataataagtaccaattaattaatttattttacagacttac---------------------acgttatt 17020035  T
Q  114 cccatgaatcggcctatataaatcaataatacagcttcttggtttgttatcattccaatatggcttcttctacttcttccaccaacaaagtgaccctcaa 213  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17020036 cccatgaatcggcctatataaatcaataatacagcttcttgatttgttatcattccaatatggcttcttctacttcttccaccaacaaagtgaccctcaa 17020135  T
Q  214 acttctcattgacaccatgaatgagaaagttctgtttgctgaagcatcaaaaactgtgatagattttcttttcaatctgcttcgtttgccagttggtact 313  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  17020136 acttcttattgacaccatgaatgagaaagttctgtttgctgaagcatcaaaagctgtgatagattttcttttcaatctgcttcgtttgccagttggtact 17020235  T
Q  314 gttgttaaacttttaaacaagaatggcatggttggtagcattggtaatctctataacagtgttgaaactttgtccgataattatatggaacaagaacaaa 413  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  17020236 gttgttaaacttttaaacaagaatggcatggttggtagcattggtaatctctataacagtgttgaaactttgtccgatcattatatggaacaagaccaaa 17020335  T
Q  414 ctaaagaggttttgctgaaccccagagctcctatctattcaactgaaattgcaggccttcttcccgcaaacaataccgatgccaacaacttgggaggtcg 513  Q
    ||||||||| ||| |||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |    
T  17020336 ctaaagagg-tttactgaaccccaaagctcctatctcttcaactgaaattgcaggccttcttccggcaaacaataccgatgccaacaacttgggaggttg 17020434  T
Q  514 aggaaatttattctatagatgcgga 538  Q
    ||||||||| |||||||||||||||    
T  17020435 aggaaatttgttctatagatgcgga 17020459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 18 - 538
Target Start/End: Original strand, 17550394 - 17550896
Alignment:
Q  18 aattcacagttgccacattcccatgctcgtaataataagtaccaattaatt----tattttacagactttccagtttctatatattccatctacgttatt 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||| |                     ||||||||    
T  17550394 aattcacagttgccacattcccatgctcgtaataataagtaccaattaattaatttattttacagacttac---------------------acgttatt 17550472  T
Q  114 cccatgaatcggcctatataaatcaataatacagcttcttggtttgttatcattccaatatggcttcttctacttcttccaccaacaaagtgaccctcaa 213  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17550473 cccatgaatcggcctatataaatcaataatacagcttcttgttttgttatcattccaatatggcttcttctacttcttccaccaacaaagtgaccctcaa 17550572  T
Q  214 acttctcattgacaccatgaatgagaaagttctgtttgctgaagcatcaaaaactgtgatagattttcttttcaatctgcttcgtttgccagttggtact 313  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  17550573 acttcttattgacaccatgaatgagaaagttctgtttgctgaagcatcaaaagctgtgatagattttcttttcaatctgcttcgtttgccagttggtact 17550672  T
Q  314 gttgttaaacttttaaacaagaatggcatggttggtagcattggtaatctctataacagtgttgaaactttgtccgataattatatggaacaagaacaaa 413  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  17550673 gttgttaaacttttaaacaagaatggcatggttggtagcattggtaatctctataacagtgttgaaactttgtccgatcattatatggaacaagaccaaa 17550772  T
Q  414 ctaaagaggttttgctgaaccccagagctcctatctattcaactgaaattgcaggccttcttcccgcaaacaataccgatgccaacaacttgggaggtcg 513  Q
    ||||||||| ||| |||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |    
T  17550773 ctaaagagg-tttactgaaccccaaagctcctatctcttcaactgaaattgcaggccttcttccggcaaacaataccgatgccaacaacttgggaggttg 17550871  T
Q  514 aggaaatttattctatagatgcgga 538  Q
    ||||||||| |||||||||||||||    
T  17550872 aggaaatttgttctatagatgcgga 17550896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 186 - 288
Target Start/End: Complemental strand, 17017117 - 17017015
Alignment:
Q  186 cttcttccaccaacaaagtgaccctcaaacttctcattgacaccatgaatgagaaagttctgtttgctgaagcatcaaaaactgtgatagattttctttt 285  Q
    |||||||||||| |||| |||||||||||||||| |||||||| | || ||| | |||||| |||||||||||||| ||| | ||  |||| ||||||||    
T  17017117 cttcttccaccaccaaactgaccctcaaacttcttattgacacaaagattgaaagagttctctttgctgaagcatctaaacccgtcgtagactttctttt 17017018  T
Q  286 caa 288  Q
    |||    
T  17017017 caa 17017015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 186 - 288
Target Start/End: Complemental strand, 17547554 - 17547452
Alignment:
Q  186 cttcttccaccaacaaagtgaccctcaaacttctcattgacaccatgaatgagaaagttctgtttgctgaagcatcaaaaactgtgatagattttctttt 285  Q
    |||||||||||| |||| |||||||||||||||| |||||||| | || ||| | |||||| |||||||||||||| ||| | ||  |||| ||||||||    
T  17547554 cttcttccaccaccaaactgaccctcaaacttcttattgacacaaagattgaaagagttctctttgctgaagcatctaaacccgtcgtagactttctttt 17547455  T
Q  286 caa 288  Q
    |||    
T  17547454 caa 17547452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 186 - 380
Target Start/End: Original strand, 17522266 - 17522460
Alignment:
Q  186 cttcttccaccaacaaagtgaccctcaaacttctcattgacaccatgaatgagaaagttctgtttgctgaagcatcaaaaactgtgatagattttctttt 285  Q
    |||||||  ||| ||||||| || | || ||||| || ||||| | |||| |||||||||| ||||||||||| |||||| ||||| | || ||||||||    
T  17522266 cttcttcttccaccaaagtgtccatgaagcttcttatcgacacaaagaatcagaaagttctctttgctgaagcttcaaaagctgtggttgactttctttt 17522365  T
Q  286 caatctgcttcgtttgccagttggtactgttgttaaacttttaaacaagaatggcatggttggtagcattggtaatctctataacagtgttgaaa 380  Q
    |||  ||||  | |||||| | || |||||||| || ||  ||| |   |||||||||||||||||| | || ||||| ||| | ||||||||||    
T  17522366 caacttgctatgcttgccaatcggcactgttgtgaagctactaagcgcaaatggcatggttggtagcttagggaatctgtatgagagtgttgaaa 17522460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 138; Significance: 8e-72; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 119 - 483
Target Start/End: Complemental strand, 52134022 - 52133655
Alignment:
Q  119 gaatcggcctatataaatcaataatacagcttcttggtttgttatcattccaatatggcttcttctacttcttccac---caacaaagtgaccctcaaac 215  Q
    ||||||||||||||||||||| |||||||| ||| ||||||||||| || ||| ||||||||||| ||||||||  |   ||||||||||||||||||||    
T  52134022 gaatcggcctatataaatcaacaatacagcatctcggtttgttatcctttcaacatggcttcttcaacttcttcttctcccaacaaagtgaccctcaaac 52133923  T
Q  216 ttctcattgacaccatgaatgagaaagttctgtttgctgaagcatcaaaaactgtgatagattttcttttcaatctgcttcgtttgccagttggtactgt 315  Q
    ||||||||||||| |  ||||| ||||||||||| |||||||| || ||| |||||||||||||||| || ||  ||||||| ||||| || ||||| ||    
T  52133922 ttctcattgacactaaaaatgacaaagttctgttcgctgaagcttccaaagctgtgatagattttctctttaacttgcttcgcttgcctgtcggtacagt 52133823  T
Q  316 tgttaaacttttaaacaagaatggcatggttggtagcattggtaatctctataacagtgttgaaactttgtccgataattatatggaacaagaacaaact 415  Q
     ||||||||  | | ||| |||||||||||||||||||| ||||| |||||| | |||||||||||| |||| |||||||||||||||||| | ||||||    
T  52133822 agttaaactactgaccaaaaatggcatggttggtagcataggtaacctctatcatagtgttgaaactctgtctgataattatatggaacaaaaccaaact 52133723  T
Q  416 aaagaggttttgctgaaccccagagctcctatctattcaactgaaattgcaggccttcttcccgcaaa 483  Q
    || ||||   |  ||||||| | ||||||| ||| |||  ||| |||||| ||| |||||||||||||    
T  52133722 aaggaggaactcttgaacccaatagctcctgtctcttctgctggaattgctggctttcttcccgcaaa 52133655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 168 - 380
Target Start/End: Complemental strand, 52145854 - 52145645
Alignment:
Q  168 ccaatatggcttcttctacttcttccaccaacaaagtgaccctcaaacttctcattgacaccatgaatgagaaagttctgtttgctgaagcatcaaaaac 267  Q
    ||||||||||||||||| ||||| |||||||   |||| |  | || ||||| || || || | ||||||||||||||| ||||||||||| |||||| |    
T  52145854 ccaatatggcttcttcttcttctaccaccaa---agtgtctttgaagcttcttatagatacaaagaatgagaaagttctctttgctgaagcttcaaaatc 52145758  T
Q  268 tgtgatagattttcttttcaatctgcttcgtttgccagttggtactgttgttaaacttttaaacaagaatggcatggttggtagcattggtaatctctat 367  Q
    ||| ||||| ||||| |||||| ||||  | |||||| |||| || || ||||| ||  ||| ||  ||||||||| |||||||  | || ||||| |||    
T  52145757 tgtaatagactttctgttcaatttgctatgcttgccaattggcaccgtggttaagctcctaagcacaaatggcatgattggtagtttaggaaatctgtat 52145658  T
Q  368 aacagtgttgaaa 380  Q
     | ||||||||||    
T  52145657 cagagtgttgaaa 52145645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 215 - 380
Target Start/End: Complemental strand, 52142292 - 52142127
Alignment:
Q  215 cttctcattgacaccatgaatgagaaagttctgtttgctgaagcatcaaaaactgtgatagattttcttttcaatctgcttcgtttgccagttggtactg 314  Q
    ||||| || ||||| | |||| |||||||||| ||||||||||| |||||| ||||  |||| |||||||||||  ||||  |||||||| | || ||||    
T  52142292 cttcttatcgacacaaagaatcagaaagttctctttgctgaagcttcaaaagctgtcgtagactttcttttcaacttgctatgtttgccaatcggcactg 52142193  T
Q  315 ttgttaaacttttaaacaagaatggcatggttggtagcattggtaatctctataacagtgttgaaa 380  Q
    |||| || ||  ||| |   |||||||||||||||||| | || ||||| ||| | ||||||||||    
T  52142192 ttgtgaagctgctaagcgctaatggcatggttggtagcttagggaatctgtatgagagtgttgaaa 52142127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 219 - 283
Target Start/End: Complemental strand, 52150285 - 52150221
Alignment:
Q  219 tcattgacaccatgaatgagaaagttctgtttgctgaagcatcaaaaactgtgatagattttctt 283  Q
    |||||||||| | ||| ||||||||||| ||||||||| |||||||| ||||  ||||| |||||    
T  52150285 tcattgacacaaagaaggagaaagttctctttgctgaaacatcaaaacctgtagtagatattctt 52150221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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