View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11582_low_12 (Length: 567)
Name: NF11582_low_12
Description: NF11582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11582_low_12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 1 - 484
Target Start/End: Complemental strand, 52443872 - 52443383
Alignment:
| Q |
1 |
tatgggtgatggtgattacgctgggttctttttcaatttggattcaattagctggcttaagttgggtttgtctggcatcaccagtatttctgactacact |
100 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| | |
|
|
| T |
52443872 |
tatgggtaatggtgattatgctgggttctttttcaatttggattcaattagctggcttaagtggggtttgtctaacatcaccagtatttctgactacatt |
52443773 |
T |
|
| Q |
101 |
ggtaacaatgattatgttgagttatttgaaaaaattcaatatttttgcaacaggcatttagtgggcttggcgtaatcgtaattcttctagcatcaccaat |
200 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
52443772 |
ggtaacggtgattatgttgagttatttgaaaaaattcagtatttttgcaacaggcatttagtgggcttggcgtaatcgcaattcttctagcatcaccaat |
52443673 |
T |
|
| Q |
201 |
gtagcaatcccacaataccaccttatgatcgaaccccataatacgacttctacattcatccccttgcttccccgattatctttgggcaagccattgtcga |
300 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
52443672 |
gtagcaatcccataataccaccttatgatcgaaccccataatacgacttatacatttatccccttgcttccccgattatctttgggcaagccattgttga |
52443573 |
T |
|
| Q |
301 |
actccatgcaatagatctagtgcttttgttggctaaacaattgaataaccattacttgttacacataatctcttcactgtgttgataccctccattttta |
400 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
52443572 |
actccatgcaatagatcaagtgcttttgttggctaaacaattgaatcaccattacttgttacacataatctcttcactatgttgataccctccattttta |
52443473 |
T |
|
| Q |
401 |
aataccaagatttcgcaaatatgtcactttgatcgaagacat------cctccttcatcaaaatcgacatgttcatattgttcacatctt |
484 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
52443472 |
aataccaagatttcgcaaatatgtcactttgatcgaagacatcaaagacctcctccatcaaaatcgacatgttcatattgttcacatctt |
52443383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 355 - 505
Target Start/End: Original strand, 35797954 - 35798109
Alignment:
| Q |
355 |
cttgttacacataatctcttcactgtgttgataccctccatttttaaataccaagatttcgcaaatatgtcactttgatcgaagacatc-----ctcctt |
449 |
Q |
| |
|
|||||| |||||| |||||||| | |||||||| ||| || || ||| ||||||||||| |||||||| |||| ||||| || ||||| |||||| |
|
|
| T |
35797954 |
cttgttgcacatattctcttcattatgttgatatcctacaagttcaaacaccaagatttcacaaatatgacactctgatccaaaacatcaaaatctcctt |
35798053 |
T |
|
| Q |
450 |
catcaaaatcgacatgttcatattgttcacatctttcgagaagaaaatagttgtgc |
505 |
Q |
| |
|
|||||| || | ||||| ||||||||||| |||||| |||||||||| ||||| |
|
|
| T |
35798054 |
catcaagattgctatgtttgcattgttcacatgtttcgataagaaaatagatgtgc |
35798109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 305 - 352
Target Start/End: Complemental strand, 37304434 - 37304387
Alignment:
| Q |
305 |
catgcaatagatctagtgcttttgttggctaaacaattgaataaccat |
352 |
Q |
| |
|
||||||||| ||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
37304434 |
catgcaatacatcaagggcttttgttggctaaacaattgaataaccat |
37304387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 351 - 439
Target Start/End: Original strand, 12299995 - 12300083
Alignment:
| Q |
351 |
attacttgttacacataatctcttcactgtgttgataccctccatttttaaataccaagatttcgcaaatatgtcactttgatcgaaga |
439 |
Q |
| |
|
||||||||||||||| | | |||||| |||||||||| ||| ||| || ||| ||||| ||| ||||||||||||||||||| |||| |
|
|
| T |
12299995 |
attacttgttacacagattttcttcattgtgttgatatcctgcatgttcaaacaccaaagttttacaaatatgtcactttgatccaaga |
12300083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University