View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11582_low_14 (Length: 536)
Name: NF11582_low_14
Description: NF11582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11582_low_14 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 450; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 18 - 536
Target Start/End: Original strand, 43169622 - 43170141
Alignment:
| Q |
18 |
taagggaggttacgttttcaactattaaaaagtgtggacttggctttatctttcatcgacaataaaatcgtaccgatagatataagaagagacataaaaa |
117 |
Q |
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| T |
43169622 |
taagggaggttacgttttcaactattaaaaagtgtggacttggctttatctttcatcgacaataaaatcgtaccgatagatctaagaagagacataaaaa |
43169721 |
T |
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| Q |
118 |
atcgtaccacttagtctttatatagnnnnnnnnnnatataagaaagtcttagcaatagttgtaagaaagttgttatttaattttcattttgataattaag |
217 |
Q |
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| T |
43169722 |
atcgtaccacttagtctttatatagttttttttttatataagaaagtcttagcaataattgtaagaaagttgttatttaattttcattttgataattaag |
43169821 |
T |
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| Q |
218 |
caaccgtattatattaaatttcatccattaattttcaattttaaatttcattttataaaagactaacttatgattggttatttggatcagacgacatatc |
317 |
Q |
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| T |
43169822 |
caaccgtgttatattaaatttcatccattaattttcaattttaaattttcttttataaaagactaacttatgattggttatttggatcagacgacatatc |
43169921 |
T |
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| Q |
318 |
cacttattttttgttagagtgatttaaactgattaagtagtacttggatattatgtctctatcttggaaagacttgactaataatgtccctgctaagatc |
417 |
Q |
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| T |
43169922 |
cacttattttttgttagagtgatttaaactgattaagtagtacttggatattatgtctctatcttggaaagacttgacttataatgtccctgctaagatc |
43170021 |
T |
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| Q |
418 |
tattggtagggtattattgtcgatgaaagataaatccaaacccacattttttgtatagttgaaaatgtaactataagtccc-taaaaatcaaaatggtag |
516 |
Q |
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| T |
43170022 |
tattggtagggtataattgtcgatgaaagataaatccaaacccacattttttgtatagttgaaaatgcaactataagtcccttaaaaatcaaaatggtag |
43170121 |
T |
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| Q |
517 |
ggtcagtacattgattttgt |
536 |
Q |
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| T |
43170122 |
ggtcagtacattgattttgt |
43170141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 43158486 - 43158416
Alignment:
| Q |
18 |
taagggaggttacgttttcaactattaaaaagtgtggacttggctttatctttcatcgacaataaaatcgt |
88 |
Q |
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||||||| ||||| ||||| || |||||| | ||||||||||||| |||| |||||||||||||||||||| |
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| T |
43158486 |
taagggaagttacattttctacaattaaataatgtggacttggctctatccttcatcgacaataaaatcgt |
43158416 |
T |
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