View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11582_low_15 (Length: 520)
Name: NF11582_low_15
Description: NF11582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11582_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 95 - 500
Target Start/End: Complemental strand, 28064991 - 28064590
Alignment:
| Q |
95 |
catattaaacaagttttttcaaatgtgagaatgaaaatggcaaagaaagcaaaattaaacaatttcttggcaattgaaagaaacattacatgtaaaaaag |
194 |
Q |
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| T |
28064991 |
catattaaacaagttttttcaaatgtcagaatgaaaatggcaaagaaagcaaaattaaacaatttcttggcaattgaaaaacacattacatgtgaaaaag |
28064892 |
T |
|
| Q |
195 |
gaaaagaatgaagaatatattggaaggaaacctccagcatatgaactatgaaggatgccatagaacctcattaacccacttgaaaataaaacagaccagt |
294 |
Q |
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| T |
28064891 |
gaaaagaatgaagaat----tggaagcaaacctccagcatatgaactatgaaggatgtcatagaacctcattaacccacttgaaaataaaacagaccagt |
28064796 |
T |
|
| Q |
295 |
tgaaattaatctccaaaaatacccaattttattttcaattgaatctataataaacctgtttaggtgaaattgtaaacatattaactaatgaatgacaaag |
394 |
Q |
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| T |
28064795 |
tgaaattaatctccaaaaatacccaattttattttcaattgaatctataataaacctgtttaggtgaaattgtaaacatcttaactaatgaatgacaaag |
28064696 |
T |
|
| Q |
395 |
acnnnnnnntaatttcactccaatagcttgctcatattgaatattgggatacaacgtatatatgtgaatgatcgttaactagtcattgaatcttgagatg |
494 |
Q |
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| T |
28064695 |
acaaaaaaataatttcactccaatatcttgctcatattgagtattgggatacaacgtatatatgtgaatgatcgttaactagtcattgagtcttgagatg |
28064596 |
T |
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| Q |
495 |
cccatc |
500 |
Q |
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| T |
28064595 |
cccatc |
28064590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 254 - 371
Target Start/End: Original strand, 43216412 - 43216529
Alignment:
| Q |
254 |
atagaacctcattaacccacttgaaaataaaacagac-cagttgaaattaatctccaaaaatacccaattttattttcaattgaatctataataaacctg |
352 |
Q |
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|||||||||| | | ||||||||||||| ||||| || || ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| || |
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| T |
43216412 |
atagaacctcgtgagcccacttgaaaatcaaacatacacaattgaaatgaatctccaaaaatacccaattttattt-caattgaatctataataaacatg |
43216510 |
T |
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| Q |
353 |
tttaggtgaaattgtaaac |
371 |
Q |
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|||| |||||||||||||| |
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| T |
43216511 |
tttaagtgaaattgtaaac |
43216529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 18157493 - 18157559
Alignment:
| Q |
20 |
tttttggttgtatcagcttgtcactttgcacttcttgtatgtggcctttaa-tatatatgccgattc |
85 |
Q |
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| T |
18157493 |
tttttggttgtatcagctagtcactttgcacttcttgtgcgtggcctttaattatatatgccgattc |
18157559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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