View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11582_low_16 (Length: 512)
Name: NF11582_low_16
Description: NF11582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11582_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 373; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 53 - 493
Target Start/End: Original strand, 6094201 - 6094660
Alignment:
| Q |
53 |
gaattgaagagttgcgattaaatgttagtgtaaaataacttttgatagacaatgcatatcccttaatctcgaatcttaagcctaccaacatgaacaatat |
152 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6094201 |
gaattgaagagttgcgattgaatgttagtgtaaaataacttttgatagacaatgcatatcccttaatctcgaatcttaagcctaccaacatgaacaatat |
6094300 |
T |
|
| Q |
153 |
gcatgtatagagttgtattcttataaaaatgatgtgtggccttcactctatgtgtcacattccaaattcaatgcttttgtttagacttgattgttaaatt |
252 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
6094301 |
gcatgtatagagttgtattcttataaaaatgatgtgtggccttcactctatgtgtcacattccaaattcaatgcttttgtttagacttgatttttaaatt |
6094400 |
T |
|
| Q |
253 |
aagttatctaatatgaatttccctctacttgattcatttttataggaaaactaaaatggacaattttgtgcatgagcttcaataaaggatatcaaaatct |
352 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6094401 |
aagttatctaatatgaatttccctctacttgattcatctttataggaaaaccaaaatggacaattttgtgcatgagcttcaataaaggatatcaaaatct |
6094500 |
T |
|
| Q |
353 |
cacaaaattcaatatagt-tttctcatttgtattgaaatccaacattactaaaaaactacgaaa------------------gatgtgttgatgcataag |
433 |
Q |
| |
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|||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
6094501 |
cacaaaattcaatatagtctttctcatttgttttgaaatccaacattactaaaaaactacgaaaagaggtatgctagtacctgatgtgttgatgcataag |
6094600 |
T |
|
| Q |
434 |
ccaaagcattttctcttctcatagcagcaatttgtctggtcaacaattttgcttggattt |
493 |
Q |
| |
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| T |
6094601 |
ccaaagcattttctcttctcatagcagcaatttgtctggtcaacaattttgcttggattt |
6094660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 18 - 502
Target Start/End: Original strand, 44188004 - 44188508
Alignment:
| Q |
18 |
actgcttagttagaaatcgtagaatatgatgtagcgaattgaagagttgcgattaaatgttagtgtaaaataacttttgatagacaatgcatatccctta |
117 |
Q |
| |
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|||||||||||| |||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
44188004 |
actgcttagttaaaaatcgtaaaatatgatgtagcgaattgaagagttgcaattgaatgttagtgtaaaataacttttgagtgacaatgcatatccctta |
44188103 |
T |
|
| Q |
118 |
atctcgaatcttaagcctaccaacatgaacaatatgcatgtatagagttgtattcttataaaaatga-tgtgtggccttcactctatgtgtcacattcca |
216 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
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| T |
44188104 |
atctcgaatcttaaacctaccaacatgaacaatatggatgtatagagtagtattcttataaaaatgactgtgtggccttcactctatgtgtcacattcga |
44188203 |
T |
|
| Q |
217 |
aattcaatgcttttgtttagacttgattgttaaattaagttatctaatatgaatttccctctacttgattcatttttataggaaaactaaaatggacaat |
316 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||| |
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| T |
44188204 |
aattcaatgcttttgtttagacttgatttttaaattaagttatctaatttgaatttccctctaattgattcatttttataggaaaaccaaaatggacaat |
44188303 |
T |
|
| Q |
317 |
tttgtgcatgagcttcaataaaggatatcaaaatctcacaaaattcaatatagt-tttctcatttgtattgaaatccaacattactaaaaaactacgaaa |
415 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
44188304 |
tttgtgcatgagcttcaataaaggatatcaaaatctcacaaaattcaatatagtctttctcatttgtattgaaatcctacattactaaaaaactacgaaa |
44188403 |
T |
|
| Q |
416 |
------------------gatgtgttgatgcataagccaaagcattttctcttctcatagcagcaatttgtctggtcaacaattttgcttggatttgctc |
497 |
Q |
| |
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||||| ||||||||||| |||||| | ||| |||| ||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
44188404 |
agaggtattttagtacctgatgtattgatgcataaatcaaagcctattcacttcgcatagcagcaatttgtctgttcaacaattttgcttggatttgctc |
44188503 |
T |
|
| Q |
498 |
ctttg |
502 |
Q |
| |
|
||||| |
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|
| T |
44188504 |
ctttg |
44188508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 18 - 502
Target Start/End: Original strand, 32727131 - 32727635
Alignment:
| Q |
18 |
actgcttagttagaaatcgtagaatatgatgtagcgaattgaagagttgcgattaaatgttagtgtaaaataacttttgatagacaatgcatatccctta |
117 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
32727131 |
actgcttagttaaaaatcgtaaaatatgatgtagcaaattgaagagttgcaattgaatgttagtgtaaaataacttttgagtgacaatgcatatccctta |
32727230 |
T |
|
| Q |
118 |
atctcgaatcttaagcctaccaacatgaacaatatgcatgtatagagttgtattcttataaaaatga-tgtgtggccttcactctatgtgtcacattcca |
216 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
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| T |
32727231 |
atctcgaatcttaaacctaccaacatgaacaatatgcatgtatagagtagtattcttataaaaatgactgtgtggccttcactctatgtgtcacattcga |
32727330 |
T |
|
| Q |
217 |
aattcaatgcttttgtttagacttgattgttaaattaagttatctaatatgaatttccctctacttgattcatttttataggaaaactaaaatggacaat |
316 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||| |
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| T |
32727331 |
aattcaatgcttttgtttagacttgatttttaaattaagttatctaatttgaatttccctctaattgattcatttttataggaaaaccaaaatggacaat |
32727430 |
T |
|
| Q |
317 |
tttgtgcatgagcttcaataaaggatatcaaaatctcacaaaattcaatatagt-tttctcatttgtattgaaatccaacattactaaaaaactacgaaa |
415 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
32727431 |
tttgtgcatgagcttcaataaaggatatcaaaatctcacaaaattcaatatagtctttctcatttgtattgaaatcctacattactaaaaaactacgaaa |
32727530 |
T |
|
| Q |
416 |
------------------gatgtgttgatgcataagccaaagcattttctcttctcatagcagcaatttgtctggtcaacaattttgcttggatttgctc |
497 |
Q |
| |
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||||| ||||||||||| |||||| | ||| |||| ||||||||||||||||||| | ||||||||||||||||||||||| |
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| T |
32727531 |
agaggtattttagtacctgatgtattgatgcataaatcaaagcctattcacttcgcatagcagcaatttgtctgttaaacaattttgcttggatttgctc |
32727630 |
T |
|
| Q |
498 |
ctttg |
502 |
Q |
| |
|
||||| |
|
|
| T |
32727631 |
ctttg |
32727635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 71; Significance: 6e-32; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 416 - 502
Target Start/End: Complemental strand, 43095660 - 43095574
Alignment:
| Q |
416 |
gatgtgttgatgcataagccaaagcattttctcttctcatagcagcaatttgtctggtcaacaattttgcttggatttgctcctttg |
502 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
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| T |
43095660 |
gatgtgttgatgcataagccaaagccttttctcttctcatagcagcaatttgtctattcaacaatcttgcttggatttgctcctttg |
43095574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 45 - 88
Target Start/End: Complemental strand, 43095774 - 43095731
Alignment:
| Q |
45 |
gatgtagcgaattgaagagttgcgattaaatgttagtgtaaaat |
88 |
Q |
| |
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|||||||| ||||||||||||| ||||||||||||||||||||| |
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| T |
43095774 |
gatgtagcaaattgaagagttgtgattaaatgttagtgtaaaat |
43095731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 370 - 410
Target Start/End: Complemental strand, 43095724 - 43095684
Alignment:
| Q |
370 |
ttttctcatttgtattgaaatccaacattactaaaaaacta |
410 |
Q |
| |
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||||||||||||||||||||| || ||||||||||| |||| |
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| T |
43095724 |
ttttctcatttgtattgaaattcagcattactaaaatacta |
43095684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 40 - 122
Target Start/End: Complemental strand, 13898007 - 13897925
Alignment:
| Q |
40 |
aatatgatgtagcgaattgaagagttgcgattaaatgttagtgtaaaataacttttgatagacaatgcatatcccttaatctc |
122 |
Q |
| |
|
|||||||||| || ||||||||||||| |||| || | | |||||||||||| | || ||||||||||||||| ||||||| |
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| T |
13898007 |
aatatgatgtggcaaattgaagagttgtgattggatttcaatgtaaaataactatacattgacaatgcatatcccgtaatctc |
13897925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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