View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11582_low_17 (Length: 432)
Name: NF11582_low_17
Description: NF11582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11582_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 306; Significance: 1e-172; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 86 - 416
Target Start/End: Complemental strand, 36675179 - 36674853
Alignment:
| Q |
86 |
attcctgaagtacatatatatgtttttaatgaaagcttaaaaagcaaattagtatgacccacctatgatacccactactgttcgagcaatttctgcagta |
185 |
Q |
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| T |
36675179 |
attcctgaagtac----atatgtttttaatgaaagcttaaaaagcaaattagtatgacccacctatgatacccactgctgttcgagcaatttctgcagta |
36675084 |
T |
|
| Q |
186 |
ctcatttttcctagattttgcaactgaaattacaaatttgagtctataacactcactctcgattcttgagaatatagtataaacttataaatgcacgaat |
285 |
Q |
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| T |
36675083 |
ctcatttttcctagattttgcaactgaaattacaaatttgagtctataacactcactctcgattcttgagaatatagtataaacttataaatgcactaat |
36674984 |
T |
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| Q |
286 |
ttaattgtattaggtagatcatgtatattgcatgtgttgtgactaattgtgagggagtatgtacggtggtattcgtcctataaatagagaaaagtttgat |
385 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36674983 |
ttaattgtattaggtagatcatgtatattgcatgtgttgtgactaattgtgagggagtatgtacggtggtattcgtcctataaatagagaaaagtttgat |
36674884 |
T |
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| Q |
386 |
tgagcatatgattgagaaattaagttcattt |
416 |
Q |
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| T |
36674883 |
tgagcatatgattgagaaattaagttcattt |
36674853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 36675264 - 36675229
Alignment:
| Q |
1 |
gcagccggcgatgacatttcctgaagtcaagaagga |
36 |
Q |
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| T |
36675264 |
gcagccggcgatgacatttcctgaagtcaagaagga |
36675229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 36685346 - 36685311
Alignment:
| Q |
1 |
gcagccggcgatgacatttcctgaagtcaagaagga |
36 |
Q |
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| T |
36685346 |
gcagccggcgatgacatttcctgaagtcaagaagga |
36685311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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