View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11582_low_19 (Length: 400)

Name: NF11582_low_19
Description: NF11582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11582_low_19
NF11582_low_19
[»] chr3 (2 HSPs)
chr3 (46-383)||(8522210-8522547)
chr3 (5-45)||(8522147-8522187)
[»] chr5 (11 HSPs)
chr5 (102-383)||(42116886-42117173)
chr5 (99-382)||(42122646-42122923)
chr5 (102-382)||(42128044-42128318)
chr5 (205-383)||(41714169-41714347)
chr5 (228-382)||(34233440-34233594)
chr5 (228-382)||(34241213-34241367)
chr5 (207-382)||(41618305-41618480)
chr5 (239-382)||(41572666-41572809)
chr5 (4-46)||(42116804-42116846)
chr5 (117-176)||(34241407-34241466)
chr5 (122-176)||(34233634-34233688)
[»] chr6 (1 HSPs)
chr6 (122-382)||(25523684-25523943)
[»] chr4 (1 HSPs)
chr4 (86-380)||(11117289-11117578)
[»] chr2 (4 HSPs)
chr2 (177-382)||(11995051-11995256)
chr2 (177-374)||(12247674-12247871)
chr2 (226-342)||(32682381-32682497)
chr2 (258-380)||(9423384-9423506)


Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 46 - 383
Target Start/End: Original strand, 8522210 - 8522547
Alignment:
46 aaacttacaactgaaaatcaaactaactagatcaaaagagtcaagcttgttttaacagaaagtaaaaacccaacagacaaaagagaaaataaatacaaca 145  Q
    ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
8522210 aaacttacaactgaaaatcaaactagcaagatcaaaagagtcaagcttgttttaacagaaagtaaaaacccaacagacaaaagagaaaataattacaaca 8522309  T
146 ataaaactacgacatttgcaccatctgattctgattctgatttgtgattgaactttggttcctcctcattcttgtccttcttttcactctcctcttaggc 245  Q
    | |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
8522310 acaaaactacgacatttgcaccatctgattctgattctgattcgtgattgaactttggttcctcgtcattcttgtccttcttttcactctcctcttaggc 8522409  T
246 tgaccaccaaatatcatgacaagccatctaggctttccaattaaaaacatataatatccaatgcctattccaatcacaaatccacatccgtatccaattg 345  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
8522410 tgaccaccaaatatcatgacaagccatctaggctttccaattaaaaacatataatatccaatgcctattccaatcacaaatccacatccgtatccaattg 8522509  T
346 ccaccggtttccatccaaatccaaatttctcttcactg 383  Q
    |||| ||||||||||||||| |||| ||||||||||||    
8522510 ccactggtttccatccaaattcaaacttctcttcactg 8522547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 8522147 - 8522187
Alignment:
5 aacttggaattttattatataacacatcttgtggcatgcac 45  Q
    |||||||||||||||||||||||||| ||||||||||||||    
8522147 aacttggaattttattatataacacaacttgtggcatgcac 8522187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 177; Significance: 3e-95; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 102 - 383
Target Start/End: Original strand, 42116886 - 42117173
Alignment:
102 agaaagtaaaaacccaacagacaaaagagaaaataaatacaacaataaaactacgacatttgcaccatctg------attctgattctgatttgtgattg 195  Q
    |||||||||||| | |||| |||| |||||||||||  ||||||||||||||| |||||||||||||||||      |||||||||||||||  || |||    
42116886 agaaagtaaaaaactaacacacaatagagaaaataacaacaacaataaaactatgacatttgcaccatctgattctgattctgattctgattcatggttg 42116985  T
196 aactttggttcctcctcattcttgtccttcttttcactctcctcttaggctgaccaccaaatatcatgacaagccatctaggctttccaattaaaaacat 295  Q
     ||  |||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||    
42116986 taccatggttccttctcattcttgttcttcttttcactcttctcttaggctgaccaccaaatatcatcacaatccatctaggctttccaattaaaaacat 42117085  T
296 ataatatccaatgcctattccaatcacaaatccacatccgtatccaattgccaccggtttccatccaaatccaaatttctcttcactg 383  Q
    | ||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||    
42117086 aaaatatccaatgcctattccaatcacaaatccacatccatatccaattgccactgctttccatccaaatccaaatttctcttcactg 42117173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 99 - 382
Target Start/End: Original strand, 42122646 - 42122923
Alignment:
99 aacagaaagtaaaaacccaacagacaaaagagaaaataaatacaacaataaaactacgacatttgcaccatctgattctgattctgatttgtgattgaac 198  Q
    ||||||||||||||| |||||| |||| ||| ||| ||| |||||||||||||||| |||||||||||||||||||||||||||       || ||||||    
42122646 aacagaaagtaaaaaaccaacacacaacagataaagtaactacaacaataaaactatgacatttgcaccatctgattctgattca------tggttgaac 42122739  T
199 tttggttcctcctcattcttgtccttcttttcactctcctcttaggctgaccaccaaatatcatgacaagccatctaggctttccaattaaaaacatata 298  Q
      ||   |||||||| |||||| || ||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
42122740 catgtgccctcctcactcttgttctccttgtcactcttctcttaggcggaccaccaaatatcatgacaagccatctaggctttccaattaaaaacatata 42122839  T
299 atatccaatgcctattccaatcacaaatccacatccgtatccaattgccaccggtttccatccaaatccaaatttctcttcact 382  Q
    ||||||||||| |||||||||||||||||||||||| |||||||| ||||| |||||||||||||||| |||||||||||||||    
42122840 atatccaatgcatattccaatcacaaatccacatccatatccaatcgccactggtttccatccaaatctaaatttctcttcact 42122923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 102 - 382
Target Start/End: Original strand, 42128044 - 42128318
Alignment:
102 agaaagtaaaaacccaacagacaaaagagaaaataaatacaacaataaaactacgacatttgcaccatctgattctgattctgatttgtgattgaacttt 201  Q
    |||||||||||| | || | |||| ||||||||||| || ||||||||||||| |||||||||||||||||||||||||||       || ||||||  |    
42128044 agaaagtaaaaaactaatacacaatagagaaaataactagaacaataaaactatgacatttgcaccatctgattctgattca------tggttgaaccat 42128137  T
202 ggttcctcctcattcttgtccttcttttcactctcctcttaggctgaccaccaaatatcatgacaagccatctaggctttccaattaaaaacatataata 301  Q
    |   |||||||| |||||| || ||| ||||||| |||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||    
42128138 gtgccctcctcactcttgttctccttgtcactcttctcttaggctgaccaccaaatatcataacaagccatctagacttttcaattaaaaacatataata 42128237  T
302 tccaatgcctattccaatcacaaatccacatccgtatccaattgccaccggtttccatccaaatccaaatttctcttcact 382  Q
    ||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||| |||||||||||||||    
42128238 tccaatgcctattccaatcacaaatccacatccatatccaatcgccactggtttccatccaaatctaaatttctcttcact 42128318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 205 - 383
Target Start/End: Complemental strand, 41714347 - 41714169
Alignment:
205 tcctcctcattcttgtccttcttttcactctcctcttaggctgaccaccaaatatcatgacaagccatctaggctttccaattaaaaacatataatatcc 304  Q
    |||||||||||||||| || | | ||||| | ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||| ||    
41714347 tcctcctcattcttgttctccctgtcactattctcttaggctgaccaccaaatatcatgacaagccatctaggctttccgatcaaaaacatgtaataccc 41714248  T
305 aatgcctattccaatcacaaatccacatccgtatccaattgccaccggtttccatccaaatccaaatttctcttcactg 383  Q
    |||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||| |||||    
41714247 aatgcctattccaatcacaaatccacatccatatccaattgccactgctttccatccaaatccaaatttctctgcactg 41714169  T

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Target: chr5; HSP #5
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 228 - 382
Target Start/End: Complemental strand, 34233594 - 34233440
Alignment:
228 ttcactctcctcttaggctgaccaccaaatatcatgacaagccatctaggctttccaattaaaaacatataatatccaatgcctattccaatcacaaatc 327  Q
    |||||||| |||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||    
34233594 ttcactcttctcttaggatgaccaccaaatatcatcacaaaccatctaggctttccaattaaaaacatataatatccaaggcctattccaaacacaaatc 34233495  T
328 cacatccgtatccaattgccaccggtttccatccaaatccaaatttctcttcact 382  Q
    ||||||| || ||||||||||| |||||||||||||| |||||||||||||||||    
34233494 cacatccataaccaattgccactggtttccatccaaagccaaatttctcttcact 34233440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 228 - 382
Target Start/End: Complemental strand, 34241367 - 34241213
Alignment:
228 ttcactctcctcttaggctgaccaccaaatatcatgacaagccatctaggctttccaattaaaaacatataatatccaatgcctattccaatcacaaatc 327  Q
    |||||||| |||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||    
34241367 ttcactcttctcttaggatgaccaccaaatatcatcacaaaccatctaggctttccaattaaaaacatataatatccaaggcctattccaaacacaaatc 34241268  T
328 cacatccgtatccaattgccaccggtttccatccaaatccaaatttctcttcact 382  Q
    ||||||| || ||||||||||| |||||||||||||| |||||||||||||||||    
34241267 cacatccataaccaattgccactggtttccatccaaagccaaatttctcttcact 34241213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 207 - 382
Target Start/End: Complemental strand, 41618480 - 41618305
Alignment:
207 ctcctcattcttgtccttcttttcactctcctcttaggctgaccaccaaatatcatgacaagccatctaggctttccaattaaaaacatataatatccaa 306  Q
    ||||||| |||||| || ||| |||||||   |||||| ||||| ||||  ||||| |||||||||||||||||||||||||| |||| | || ||||||    
41618480 ctcctcactcttgtgctccttgtcactctttgcttaggttgacctccaaccatcatcacaagccatctaggctttccaattaacaacacaaaacatccaa 41618381  T
307 tgcctattccaatcacaaatccacatccgtatccaattgccaccggtttccatccaaatccaaatttctcttcact 382  Q
     |||||||||||| || | ||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||    
41618380 ggcctattccaataaccattccacatccatatccaatagccactggtttccatccaaatccaaatttctcttcact 41618305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 239 - 382
Target Start/End: Complemental strand, 41572809 - 41572666
Alignment:
239 cttaggctgaccaccaaatatcatgacaagccatctaggctttccaattaaaaacatataatatccaatgcctattccaatcacaaatccacatccgtat 338  Q
    |||||| ||||| ||||  ||||| ||||||||||||||||||||  |||| |||| | || |||||| |||||||||||| || | ||||||||| |||    
41572809 cttaggttgacctccaaccatcatcacaagccatctaggctttccggttaacaacacaaaacatccaaggcctattccaataaccattccacatccatat 41572710  T
339 ccaattgccaccggtttccatccaaatccaaatttctcttcact 382  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||    
41572709 ccaatagccactggtttccatccaaatccaaatttctcttcact 41572666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 46
Target Start/End: Original strand, 42116804 - 42116846
Alignment:
4 aaacttggaattttattatataacacatcttgtggcatgcaca 46  Q
    |||||||||||||||||||||||||||||||||||||||||||    
42116804 aaacttggaattttattatataacacatcttgtggcatgcaca 42116846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 117 - 176
Target Start/End: Complemental strand, 34241466 - 34241407
Alignment:
117 aacagacaaaagagaaaataaatacaacaataaaactacgacatttgcaccatctgattc 176  Q
    |||| |||| |||||||||||  | || |||||||||| |||||||||||||||||||||    
34241466 aacacacaatagagaaaataaccagaataataaaactatgacatttgcaccatctgattc 34241407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 176
Target Start/End: Complemental strand, 34233688 - 34233634
Alignment:
122 acaaaagagaaaataaatacaacaataaaactacgacatttgcaccatctgattc 176  Q
    |||| |||||||||||  | || |||||||||| |||||||||||||||||||||    
34233688 acaatagagaaaataaccagaataataaaactatgacatttgcaccatctgattc 34233634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 122 - 382
Target Start/End: Complemental strand, 25523943 - 25523684
Alignment:
122 acaaaagagaaaataaatacaacaataaaactacgacatttgcaccatctgattctgattctgatttgtgattgaactttggttcctcctcattcttgtc 221  Q
    |||||||||||||||| || ||||||||| ||| |||||||||| |||||||||||||||||||||  ||  || ||  || ||||||||||||||||||    
25523943 acaaaagagaaaataactaaaacaataaa-ctatgacatttgcatcatctgattctgattctgattcatggctgtaccatgattcctcctcattcttgtc 25523845  T
222 cttcttttcactctcctcttaggctgaccaccaaatatcatgacaagccatctaggctttccaattaaaaacatataatatccaatgcctattccaatca 321  Q
    ||| |||||||  | |||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||    
25523844 ctttttttcacctttctcttaggctgaccgccaaatatcatcacaagccatctaggctttccaactaaaaacatacaatatccaatgcctattccaatca 25523745  T
322 caaatccacatccgtatccaattgccaccggtttccatccaaatccaaatttctcttcact 382  Q
     |||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||    
25523744 gaaatccacatccatatccaattaccaccggtatccatccaaatccaaatttctcttcact 25523684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 153; Significance: 6e-81; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 86 - 380
Target Start/End: Original strand, 11117289 - 11117578
Alignment:
86 tcaagcttgttttaa-cagaaagtaaaaacccaacagacaaaagagaaaataaatacaacaataaaactacgacatttgcaccatctgattctgattctg 184  Q
    |||||||| |||||| ||||||||||||| ||||||  |||  |||||| ||| ||| |||||||||||| |||||||||||||||||||||||||||      
11117289 tcaagcttattttaaacagaaagtaaaaaaccaacacccaacggagaaagtaactacgacaataaaactatgacatttgcaccatctgattctgattca- 11117387  T
185 atttgtgattgaactttggttcctcctcattcttgtccttcttttcactctcctcttaggctgaccaccaaatatcatgacaagccatctaggctttcca 284  Q
         || ||||||  ||    ||||||| |||||| || ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
11117388 -----tgtttgaaccatgtgcgctcctcactcttgttctccttgtcactcttctcttaggctgaccaccaaatatcatgacaagccatctaggctttcca 11117482  T
285 attaaaaacatataatatccaatgcctattccaatcacaaatccacatccgtatccaattgccaccggtttccatccaaatccaaatttctcttca 380  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||| | ||||||||||||||||||||||||||||    
11117483 attaaaaacatataatatccaatgcttattccaatcacaaatccacatgcatatccaattgccactgctttccatccaaatccaaatttctcttca 11117578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 134; Significance: 1e-69; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 177 - 382
Target Start/End: Complemental strand, 11995256 - 11995051
Alignment:
177 tgattctgatttgtgattgaactttggttcctcctcattcttgtccttcttttcactctcctcttaggctgaccaccaaatatcatgacaagccatctag 276  Q
    |||||||||||  || ||| ||  |||||||| |||| |||||| || ||||||||||| || ||||||||||||||||||||||| |||||||||||||    
11995256 tgattctgattcatggttgcaccatggttcctactcactcttgttctccttttcactcttcttttaggctgaccaccaaatatcatcacaagccatctag 11995157  T
277 gctttccaattaaaaacatataatatccaatgcctattccaatcacaaatccacatccgtatccaattgccaccggtttccatccaaatccaaatttctc 376  Q
    |||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||    
11995156 gctttccaattaaaaacatacaatatccgaggcctattccaatcacaaatccacatccatatccaattgccactggtttccatccaaatccaaatttctc 11995057  T
377 ttcact 382  Q
    ||||||    
11995056 ttcact 11995051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 177 - 374
Target Start/End: Original strand, 12247674 - 12247871
Alignment:
177 tgattctgatttgtgattgaactttggttcctcctcattcttgtccttcttttcactctcctcttaggctgaccaccaaatatcatgacaagccatctag 276  Q
    |||||||||||  || ||| ||  |||||||| |||| |||||| || ||||||||||| || ||||||||||||||||||||||| |||||||||||||    
12247674 tgattctgattcatggttgcaccatggttcctactcactcttgttctccttttcactcttcttttaggctgaccaccaaatatcatcacaagccatctag 12247773  T
277 gctttccaattaaaaacatataatatccaatgcctattccaatcacaaatccacatccgtatccaattgccaccggtttccatccaaatccaaatttc 374  Q
    |||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
12247774 gctttccaattaaaaacatacaatatccgaggcctattccaatcacaaatccacatccatatccaattgccaccggtttccatccaaatccaaatttc 12247871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 226 - 342
Target Start/End: Complemental strand, 32682497 - 32682381
Alignment:
226 ttttcactctcctcttaggctgaccaccaaatatcatgacaagccatctaggctttccaattaaaaacatataatatccaatgcctattccaatcacaaa 325  Q
    |||||||||| |||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||    
32682497 ttttcactcttctcttaggatgaccaccaattatcatcacaagccatctaggctttccaattaaaaacataaagtatccaatgcctattccaatcacaaa 32682398  T
326 tccacatccgtatccaa 342  Q
    ||||||||| |||||||    
32682397 tccacatccatatccaa 32682381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 258 - 380
Target Start/End: Complemental strand, 9423506 - 9423384
Alignment:
258 atcatgacaagccatctaggctttccaattaaaaacatataatatccaatgcctattccaatcacaaatccacatccgtatccaattgccaccggtttcc 357  Q
    ||||| ||| |||||||||||||||||||||| | |||| || |||||| |||| |||||| ||| | ||||||||| |||||||||||||| | |||||    
9423506 atcatcacaggccatctaggctttccaattaacagcatacaacatccaaggccttttccaagcaccattccacatccatatccaattgccactgatttcc 9423407  T
358 atccaaatccaaatttctcttca 380  Q
    |||||||||||||||||||||||    
9423406 atccaaatccaaatttctcttca 9423384  T

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