View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11582_low_2 (Length: 863)

Name: NF11582_low_2
Description: NF11582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11582_low_2
NF11582_low_2
[»] chr2 (6 HSPs)
chr2 (1-847)||(4306576-4307425)
chr2 (407-514)||(39606587-39606694)
chr2 (743-847)||(4252958-4253062)
chr2 (738-847)||(4315438-4315547)
chr2 (389-513)||(43450840-43450963)
chr2 (743-834)||(4309467-4309558)
[»] chr5 (10 HSPs)
chr5 (360-513)||(14161498-14161651)
chr5 (394-513)||(39011486-39011605)
chr5 (407-513)||(35413559-35413665)
chr5 (764-847)||(41932399-41932482)
chr5 (407-513)||(31629557-31629663)
chr5 (407-513)||(7566657-7566761)
chr5 (400-505)||(22228285-22228390)
chr5 (455-513)||(29220963-29221021)
chr5 (782-847)||(33549301-33549366)
chr5 (782-847)||(33354038-33354103)
[»] chr3 (3 HSPs)
chr3 (407-514)||(17580882-17580989)
chr3 (422-513)||(6719706-6719797)
chr3 (66-146)||(30868816-30868896)
[»] chr4 (1 HSPs)
chr4 (407-514)||(51073288-51073395)
[»] chr6 (1 HSPs)
chr6 (407-513)||(13495955-13496061)
[»] scaffold0309 (1 HSPs)
scaffold0309 (407-514)||(1881-1988)
[»] chr8 (1 HSPs)
chr8 (425-514)||(16699261-16699350)
[»] chr1 (6 HSPs)
chr1 (394-514)||(26650097-26650217)
chr1 (406-513)||(15175890-15175997)
chr1 (405-513)||(44439238-44439345)
chr1 (461-510)||(10834165-10834214)
chr1 (440-495)||(28970640-28970695)
chr1 (481-510)||(41476008-41476037)
[»] chr7 (2 HSPs)
chr7 (420-486)||(9604260-9604327)
chr7 (420-486)||(9831831-9831898)


Alignment Details
Target: chr2 (Bit Score: 753; Significance: 0; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 753; E-Value: 0
Query Start/End: Original strand, 1 - 847
Target Start/End: Complemental strand, 4307425 - 4306576
Alignment:
Q  1 agcatagtataaataagtgtatctcagaattgtaaagactaagatttgtgaatagaattctctacatttcaatgctttgtttccaagttcatagaaaatt 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4307425 agcatagtataaataagtgtatctcagtattgtaaagactaagatttgtgaatagaattctctacatttcaatgctttgtttccaagttcatagaaaatt 4307326  T
Q  101 ttcctctcttttccattctatggagattcaatcttatattttcacaatctgatctgcagactgataagagagtaacgaacctaaagcatgaatgacgtaa 200  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4307325 ttcctctcttttccattctatagagattcaatcttatattttcacaatctgatctgcagactgataagagagtaacgaacctaaagcatgaatgacgtaa 4307226  T
Q  201 gagtaaatgattttcagttggtgaattagtaggagtaaatggtagatataataagtggcaattttcttattaagaggctttgaaggttgtctgacagata 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4307225 gagtaaatgattttcagttggtgaattagtaggagtaaatggtagatataataagtggcaattttcttattaagaggctttgaaggttgtctgacagata 4307126  T
Q  301 aaacgtttttgttggctcgtgtaactgataaaattttaatgaaggttgcctgatgaatatagagaatagctcacttttcattatttcatttggtgtgctt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||||||||||    
T  4307125 aaacgtttttgttggctcgtgtaactgataaaattttaatgaaggttgcctgatgaatatagagactagctcacttttcattatttagtttggtgtgctt 4307026  T
Q  401 ttttcattggcatcagacacttaactttgtaactttgttgagtgattctctctgcacaccttgtgcgagtagaatctctcttggtgtttaatataatctc 500  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4307025 ttttcattggcattagacacttaactttgtaactttgttgagtgattctctctgcacaccttgtgcgagtagaatctctcttggtgtttaatataatctc 4306926  T
Q  501 attttgatttcttc---nnnnnnnnngagatgaatgtattttattggtaaacgtaagaaatcaatatttaatccaacaaaactggcaaggaataaaatat 597  Q
    ||||||||||||||            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  4306925 attttgatttcttcaaaaaaaaaaaagagatgaatgtattttattggtaaacgtaagaaatcaatacttaatccaacaaaactggcaaggaataaaatat 4306826  T
Q  598 tgacaaggaagcgcagtttatggaagcatatattatacctactatttccttgttgttacaaagtaacaagttgacttggtgaaaactgcaactacattca 697  Q
    |||||||||||| | ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4306825 tgacaaggaagcacggtttatggaagcatatgctatacctactatttccttgttgttacaaagtaacaagttgacttggtgaaaactgcaactacattca 4306726  T
Q  698 atctctcagatccaatataatctcatcacatcaattaccttccaaatcatggctgttgcggttgtgggtgaagcatttctgtccgctttcattgaagttg 797  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  4306725 atctctcagatccgatataatctcatcacatcaattaccttccaaatcatggctgttgcggttgtgggtgaatcatttctgtccgctttcattgaagttg 4306626  T
Q  798 tcctcgacaggcttgcttctcctgaggttgttgacttgatctgtgggaag 847  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  4306625 tcctcgacaggcttgcttctcctgaggttgttgacttgatccgtgggaag 4306576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 407 - 514
Target Start/End: Original strand, 39606587 - 39606694
Alignment:
Q  407 ttggcatcagacacttaactttgtaactttgttgagtgattctctctgcacaccttgtgcgagtagaatctctcttggtgtttaatataatctcattttg 506  Q
    ||||||| ||||||||| |||||||||||||| ||| | ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  39606587 ttggcattagacacttatctttgtaactttgtcgagaggttctctctgcacaccttgtgcgagatgaatctctcttggtgtttaatataatctcattttg 39606686  T
Q  507 atttcttc 514  Q
    ||||||||    
T  39606687 atttcttc 39606694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 743 - 847
Target Start/End: Original strand, 4252958 - 4253062
Alignment:
Q  743 atcatggctgttgcggttgtgggtgaagcatttctgtccgctttcattgaagttgtcctcgacaggcttgcttctcctgaggttgttgacttgatctgtg 842  Q
    |||||||| || |||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||    
T  4252958 atcatggcagtggcggctgtaggtgaagcatttctgtctgctttcattgaagttgtcctcgacaggctcgcttctcctgaggttgttgtcttgatccgtg 4253057  T
Q  843 ggaag 847  Q
    |||||    
T  4253058 ggaag 4253062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 738 - 847
Target Start/End: Complemental strand, 4315547 - 4315438
Alignment:
Q  738 tccaaatcatggctgttgcggttgtgggtgaagcatttctgtccgctttcattgaagttgtcctcgacaggcttgcttctcctgaggttgttgacttgat 837  Q
    |||| |||||||| |  |||||||| |||||||| ||| |||| |||||||||||||||||||| |||| |||| |||||||||||||||||||||||||    
T  4315547 tccatatcatggcggcggcggttgttggtgaagcttttttgtctgctttcattgaagttgtccttgacaagctttcttctcctgaggttgttgacttgat 4315448  T
Q  838 ctgtgggaag 847  Q
    | ||||||||    
T  4315447 ccgtgggaag 4315438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 389 - 513
Target Start/End: Original strand, 43450840 - 43450963
Alignment:
Q  389 tttggtgtgcttttttcattggcatcagacacttaactttgtaactttgttgagtgattctctctgcacaccttgtgcgagtagaatctctcttggtgtt 488  Q
    |||| ||| |||||| | ||||||| || |||||||| |||||||||| | || ||||||||| | |||||||| ||||||  || | | |||| |||||    
T  43450840 tttgttgttctttttcctttggcattaggcacttaacattgtaactttatagaatgattctctttacacaccttatgcgagatgagtat-tcttagtgtt 43450938  T
Q  489 taatataatctcattttgatttctt 513  Q
    |||||||||||||||||||||||||    
T  43450939 taatataatctcattttgatttctt 43450963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 743 - 834
Target Start/End: Complemental strand, 4309558 - 4309467
Alignment:
Q  743 atcatggctgttgcggttgtgggtgaagcatttctgtccgctttcattgaagttgtcctcgacaggcttgcttctcctgaggttgttgactt 834  Q
    |||||||||| ||| | ||| |||||||| ||||| ||    || |||||||||||||| |||||||| ||||||||| ||||| |||||||    
T  4309558 atcatggctgctgcagctgttggtgaagcttttctatctttattaattgaagttgtccttgacaggctggcttctcctcaggttcttgactt 4309467  T

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Target: chr5 (Bit Score: 114; Significance: 2e-57; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 360 - 513
Target Start/End: Original strand, 14161498 - 14161651
Alignment:
Q  360 tagagaatagctcacttttcattatttcatttggtgtgcttttttcattggcatcagacacttaactttgtaactttgttgagtgattctctctgcacac 459  Q
    |||||| |||||| ||||| |||||||| |||| ||||||||||||||||||||||||||||||||||| || |||||| |||||||||| |||||||||    
T  14161498 tagagactagctctcttttaattatttcgtttgttgtgcttttttcattggcatcagacacttaactttatatctttgtagagtgattctttctgcacac 14161597  T
Q  460 cttgtgcgagtagaatctctcttggtgtttaatataatctcattttgatttctt 513  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  14161598 cttgtgcgagttgaatctctcttggtgtttaatataatctcattttgatttctt 14161651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 394 - 513
Target Start/End: Original strand, 39011486 - 39011605
Alignment:
Q  394 tgtgcttttttcattggcatcagacacttaactttgtaactttgttgagtgattctctctgcacaccttgtgcgagtagaatctctcttggtgtttaata 493  Q
    ||||||| || ||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||| |||||||||    
T  39011486 tgtgcttcttccattggcattagacacttatctttgtaactttgtagagtgattctctctgcacaccttgtgcgagatgaatctctcttgatgtttaata 39011585  T
Q  494 taatctcattttgatttctt 513  Q
     ||| |||||||||||||||    
T  39011586 gaatttcattttgatttctt 39011605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 407 - 513
Target Start/End: Complemental strand, 35413665 - 35413559
Alignment:
Q  407 ttggcatcagacacttaactttgtaactttgttgagtgattctctctgcacaccttgtgcgagtagaatctctcttggtgtttaatataatctcattttg 506  Q
    ||||||| | ||||||| |||||||||||| | ||| | ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  35413665 ttggcattatacacttatctttgtaactttatcgagaggttctctctgcacaccttgtgcgagatgaatctctcttggtgtttaatataatctcattttg 35413566  T
Q  507 atttctt 513  Q
    |||||||    
T  35413565 atttctt 35413559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 764 - 847
Target Start/End: Original strand, 41932399 - 41932482
Alignment:
Q  764 ggtgaagcatttctgtccgctttcattgaagttgtcctcgacaggcttgcttctcctgaggttgttgacttgatctgtgggaag 847  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||  ||||||||    
T  41932399 ggtgaagcatttctgtcagctttcattgaagttgtccttgacaggcttgcttctcctgaggttattgacttgatacgtgggaag 41932482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 407 - 513
Target Start/End: Complemental strand, 31629663 - 31629557
Alignment:
Q  407 ttggcatcagacacttaactttgtaactttgttgagtgattctctctgcacaccttgtgcgagtagaatctctcttggtgtttaatataatctcattttg 506  Q
    ||||||| |||||||||||||||||||||| | ||| |  ||||||| ||||| || ||||||  |||||||||||||||||||||||||||||||||||    
T  31629663 ttggcattagacacttaactttgtaactttatcgagaggctctctctacacactttatgcgagatgaatctctcttggtgtttaatataatctcattttg 31629564  T
Q  507 atttctt 513  Q
    |||||||    
T  31629563 atttctt 31629557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 407 - 513
Target Start/End: Complemental strand, 7566761 - 7566657
Alignment:
Q  407 ttggcatcagacacttaactttgtaactttgttgagtgattctctctgcacaccttgtgcgagtagaatctctcttggtgtttaatataatctcattttg 506  Q
    ||||||| ||||| |||||||||||||||||| ||| | |||||| |||||  ||||||||||  |||||||||||| ||||||||||||||||||||||    
T  7566761 ttggcattagacatttaactttgtaactttgtcgagaggttctctatgcac--cttgtgcgagatgaatctctcttgatgtttaatataatctcattttg 7566664  T
Q  507 atttctt 513  Q
    |||||||    
T  7566663 atttctt 7566657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 400 - 505
Target Start/End: Original strand, 22228285 - 22228390
Alignment:
Q  400 tttttcattggcatcagacacttaactttgtaactttgttgagtgattctctctgcacaccttgtgcgagtagaatctctcttggtgtttaatataatct 499  Q
    |||| ||||||||| ||||||| |||| ||||| ||||| ||||  | ||||||||||||||| ||||||||||| |||||||| || ||||||||| ||    
T  22228285 ttttccattggcattagacactaaactatgtaattttgtcgagtagtcctctctgcacaccttatgcgagtagaacctctcttgatgattaatataacct 22228384  T
Q  500 catttt 505  Q
    ||||||    
T  22228385 catttt 22228390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 455 - 513
Target Start/End: Original strand, 29220963 - 29221021
Alignment:
Q  455 cacaccttgtgcgagtagaatctctcttggtgtttaatataatctcattttgatttctt 513  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||| |||||||    
T  29220963 cacaccttgtgcgagatgaatctctcttggtgtttaatataatctcattttaatttctt 29221021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 782 - 847
Target Start/End: Original strand, 33549301 - 33549366
Alignment:
Q  782 gctttcattgaagttgtcctcgacaggcttgcttctcctgaggttgttgacttgatctgtgggaag 847  Q
    |||||||||| ||||||||| ||||  ||| |||||| ||||||||||||||||||| ||||||||    
T  33549301 gctttcattggagttgtccttgacatacttacttctcttgaggttgttgacttgatccgtgggaag 33549366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 782 - 847
Target Start/End: Complemental strand, 33354103 - 33354038
Alignment:
Q  782 gctttcattgaagttgtcctcgacaggcttgcttctcctgaggttgttgacttgatctgtgggaag 847  Q
    |||||||||| ||||||||| ||||  ||  |||||| ||||||||||||||||||| ||||||||    
T  33354103 gctttcattggagttgtccttgacatactcacttctcttgaggttgttgacttgatccgtgggaag 33354038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 4e-37; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 407 - 514
Target Start/End: Complemental strand, 17580989 - 17580882
Alignment:
Q  407 ttggcatcagacacttaactttgtaactttgttgagtgattctctctgcacaccttgtgcgagtagaatctctcttggtgtttaatataatctcattttg 506  Q
    ||||||| ||||||||| |||||||||||||| ||| | ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  17580989 ttggcattagacacttatctttgtaactttgtcgagaggttctctctgcacaccttgtgcgagatgaatctctcttggtgtttaatataatctcattttg 17580890  T
Q  507 atttcttc 514  Q
    ||||||||    
T  17580889 atttcttc 17580882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 422 - 513
Target Start/End: Original strand, 6719706 - 6719797
Alignment:
Q  422 taactttgtaactttgttgagtgattctctctgcacaccttgtgcgagtagaatctctcttggtgtttaatataatctcattttgatttctt 513  Q
    ||||||||||||||||||||| | |||| |||||||||||||||||||  ||| ||||||| ||||||||||||||||||||||||||||||    
T  6719706 taactttgtaactttgttgagaggttctttctgcacaccttgtgcgagatgaacctctcttagtgtttaatataatctcattttgatttctt 6719797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 66 - 146
Target Start/End: Original strand, 30868816 - 30868896
Alignment:
Q  66 atttcaatgctttgtttccaagttcatagaaaattttcctctcttttccattctatggagattcaatcttatattttcaca 146  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||||| | |||| |||||||||||||||||||||||||    
T  30868816 atttcaatgctttgtttccaagttcatagcaaattttcctttcttttctactctaaggagattcaatcttatattttcaca 30868896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 1e-34; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 407 - 514
Target Start/End: Original strand, 51073288 - 51073395
Alignment:
Q  407 ttggcatcagacacttaactttgtaactttgttgagtgattctctctgcacaccttgtgcgagtagaatctctcttggtgtttaatataatctcattttg 506  Q
    ||||||| |||||||||||||||||||||||| ||| | ||||||||| ||||||||||||||  |||||||||||||| ||||||||||||||||||||    
T  51073288 ttggcattagacacttaactttgtaactttgtcgagaggttctctctgtacaccttgtgcgagatgaatctctcttggtatttaatataatctcattttg 51073387  T
Q  507 atttcttc 514  Q
    ||||||||    
T  51073388 atttcttc 51073395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 4e-34; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 407 - 513
Target Start/End: Complemental strand, 13496061 - 13495955
Alignment:
Q  407 ttggcatcagacacttaactttgtaactttgttgagtgattctctctgcacaccttgtgcgagtagaatctctcttggtgtttaatataatctcattttg 506  Q
    ||||||| ||||||||| |||||||||||||| ||| | ||||||||||||||||||||||||  |||||||||||| ||||||||||||||||||||||    
T  13496061 ttggcattagacacttatctttgtaactttgtcgagaggttctctctgcacaccttgtgcgagatgaatctctcttgatgtttaatataatctcattttg 13495962  T
Q  507 atttctt 513  Q
    |||||||    
T  13495961 atttctt 13495955  T

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Target: scaffold0309 (Bit Score: 72; Significance: 3e-32; HSPs: 1)
Name: scaffold0309
Description:

Target: scaffold0309; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 407 - 514
Target Start/End: Original strand, 1881 - 1988
Alignment:
Q  407 ttggcatcagacacttaactttgtaactttgttgagtgattctctctgcacaccttgtgcgagtagaatctctcttggtgtttaatataatctcattttg 506  Q
    ||||||| | ||||||| |||||||||||| | ||| | ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  1881 ttggcattatacacttatctttgtaactttatcgagaggttctctctgcacaccttgtgcgagatgaatctctcttggtgtttaatataatctcattttg 1980  T
Q  507 atttcttc 514  Q
    ||||||||    
T  1981 atttcttc 1988  T

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Target: chr8 (Bit Score: 66; Significance: 1e-28; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 425 - 514
Target Start/End: Complemental strand, 16699350 - 16699261
Alignment:
Q  425 ctttgtaactttgttgagtgattctctctgcacaccttgtgcgagtagaatctctcttggtgtttaatataatctcattttgatttcttc 514  Q
    |||||||||||||||||| | |||||||||| |||||||||||||  |||||||||||| ||||||||||||||||||||||||||||||    
T  16699350 ctttgtaactttgttgagaggttctctctgcgcaccttgtgcgagatgaatctctcttgctgtttaatataatctcattttgatttcttc 16699261  T

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Target: chr1 (Bit Score: 57; Significance: 2e-23; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 394 - 514
Target Start/End: Original strand, 26650097 - 26650217
Alignment:
Q  394 tgtgcttttttcattggcatcagacacttaactttgtaactttgttgagtgattctctctgcacaccttgtgcgagtagaatctctcttggtgtttaata 493  Q
    ||||||| || |||| |||| ||||||||| |||||||||||||| |||||||||| |||||||| | | ||||||   ||||||  |||||||||||||    
T  26650097 tgtgcttcttacattagcattagacacttatctttgtaactttgtagagtgattctttctgcacatcgtatgcgagataaatctcgtttggtgtttaata 26650196  T
Q  494 taatctcattttgatttcttc 514  Q
    |||||||||||| ||||||||    
T  26650197 taatctcattttaatttcttc 26650217  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 406 - 513
Target Start/End: Original strand, 15175890 - 15175997
Alignment:
Q  406 attggcatcagacacttaactttgtaactttgttgagtgattctctctgcacaccttgtgcgagtagaatctctcttggtgtttaatataatctcatttt 505  Q
    |||||||||||||| ||||| |||||  ||||| |||||||||| | |||||| ||||| ||||  ||||  ||||||||||||||||||||   |||||    
T  15175890 attggcatcagacatttaacattgtatttttgtagagtgattctatttgcacatcttgtacgagatgaataactcttggtgtttaatataattctatttt 15175989  T
Q  506 gatttctt 513  Q
    ||||||||    
T  15175990 gatttctt 15175997  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 405 - 513
Target Start/End: Complemental strand, 44439345 - 44439238
Alignment:
Q  405 cattggcatcagacacttaactttgtaactttgttgagtgattctctctgcacaccttgtgcgagtagaatctctcttggtgtttaatataatctcattt 504  Q
    ||||| ||| |||||||||||||||||||||| | |||   |||||| |  ||||||||||| ||  |||||| ||||| ||||||||||||||||||||    
T  44439345 cattgacattagacacttaactttgtaactttatcgagaagttctctttatacaccttgtgcaagatgaatctatcttg-tgtttaatataatctcattt 44439247  T
Q  505 tgatttctt 513  Q
    | |||||||    
T  44439246 taatttctt 44439238  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 461 - 510
Target Start/End: Complemental strand, 10834214 - 10834165
Alignment:
Q  461 ttgtgcgagtagaatctctcttggtgtttaatataatctcattttgattt 510  Q
    |||||||||| |||||||||||   |||||||||||||||||||||||||    
T  10834214 ttgtgcgagttgaatctctcttaccgtttaatataatctcattttgattt 10834165  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 440 - 495
Target Start/End: Original strand, 28970640 - 28970695
Alignment:
Q  440 gagtgattctctctgcacaccttgtgcgagtagaatctctcttggtgtttaatata 495  Q
    |||||||||||| |||||||||||||||||  ||||| ||||||||| ||| ||||    
T  28970640 gagtgattctctttgcacaccttgtgcgagatgaatcgctcttggtgattattata 28970695  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 481 - 510
Target Start/End: Complemental strand, 41476037 - 41476008
Alignment:
Q  481 ttggtgtttaatataatctcattttgattt 510  Q
    ||||||||||||||||||||||||||||||    
T  41476037 ttggtgtttaatataatctcattttgattt 41476008  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 420 - 486
Target Start/End: Complemental strand, 9604327 - 9604260
Alignment:
Q  420 cttaactttgtaactttgttgagtgattctctct-gcacaccttgtgcgagtagaatctctcttggtg 486  Q
    ||||||||| || ||||||||||||||| ||| | ||||||||||||||||  ||||| |||||||||    
T  9604327 cttaactttatatctttgttgagtgattttcttttgcacaccttgtgcgagatgaatcactcttggtg 9604260  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 420 - 486
Target Start/End: Complemental strand, 9831898 - 9831831
Alignment:
Q  420 cttaactttgtaactttgttgagtgattctctct-gcacaccttgtgcgagtagaatctctcttggtg 486  Q
    ||||||||| || ||||||||||||||| ||| | ||||||||||||||||  ||||| |||||||||    
T  9831898 cttaactttatatctttgttgagtgattttcttttgcacaccttgtgcgagatgaatcactcttggtg 9831831  T

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