View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11582_low_21 (Length: 391)
Name: NF11582_low_21
Description: NF11582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11582_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 20 - 381
Target Start/End: Original strand, 40522518 - 40522878
Alignment:
| Q |
20 |
tataatattaatagttaattttgtttaaaccactcaagcttatttagacaaatgatgactctatgataacacttaaaacaaactaataggaccaccnnnn |
119 |
Q |
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| T |
40522518 |
tataatattaatagttaattttgtttaaaccactcaagcttatttagacaaatgatgactctatgataacacttaaaacaaactaataggaccac-aaaa |
40522616 |
T |
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| Q |
120 |
nnnctaatgaccaagaccacacaaaaattcaaggaattacaactacattcaaaatcttaattaattttaggtgtataaatcattcatcttaactaacatg |
219 |
Q |
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| T |
40522617 |
aaactaatgaccaagaccacacaaaaattcaaggaattacaactacattcaaaatcttaattaattttaggtgtataaatcattcatcttaactaacatg |
40522716 |
T |
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| Q |
220 |
aaacaaactagccatacttgtgtttcaattaagatggtgatgagcc-aaatccaaatagttgattggctaatagtttgtacagctaaggtagagagnnnn |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||| |
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| T |
40522717 |
aaacaaactagccatacttgtgtttcaattaagatggtgatgagccaaaatccaaatagttgattggctcatagtttgtacagataaggtagagag-aaa |
40522815 |
T |
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| Q |
319 |
nnnnnnggaaaataactaaaacaaggtgctgcaatagtggttcctggttatattgcatctgtg |
381 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
40522816 |
aaaaatggaaaataactaaaacaaggtgctggaatagtggttcctggttatattgcatctgtg |
40522878 |
T |
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