View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11582_low_23 (Length: 369)
Name: NF11582_low_23
Description: NF11582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11582_low_23 |
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Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 84 - 362
Target Start/End: Original strand, 6944229 - 6944513
Alignment:
| Q |
84 |
ctttagtatggcacaatgtaaaattgagcaaattatcaccttgtgtgcaaaataaatctgaaaacaaggtaaatgtatccaaatcaaaatgaaaatttat |
183 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
6944229 |
ctttagtatggcacaatgtaaaattgagcaaactatcaccttgtgtgcaaaataaatctgaaaacaaggtaaatgtaaccaaatcaaaatgaaaatttat |
6944328 |
T |
|
| Q |
184 |
tccaataaacaacatttatagtatagtaggaaacaacctatgaatgtaccaacatatgtaatgtaaaatactttaaacatcatatagtaggataagta-- |
281 |
Q |
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|||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6944329 |
tccaataaacgacatttatagtatggtaggaaacaacctatgaatgtaccaacatatgtaatgtaaaatactttaaacatcatatagtaggataagtagc |
6944428 |
T |
|
| Q |
282 |
----ttcattgattgatctaaacaaggtagaaataacagttgatgtaaactactttatatgagcatgatcagagtgcctttgctt |
362 |
Q |
| |
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||||||| || ||| ||||||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||| |
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| T |
6944429 |
ctgcttcattgcttcatcaaaacaaggtagaattaacagttgatgaggacctctttatatgagcatgatcagagtgcctttgctt |
6944513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 148 - 279
Target Start/End: Original strand, 6933952 - 6934085
Alignment:
| Q |
148 |
caaggtaaatgtatccaaatcaaaatgaaaatttattccaataaacaacatttatagtatagtaggaaacaacctatgaatgtaccaacatatgtaatgt |
247 |
Q |
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|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||| |||||| ||| ||||| ||||| || |
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| T |
6933952 |
caaggtaaatgtatccaaatcaaaataaaaattgattccaataaacaacatttatagtaacgtaggaaacaactaatgaatatactaacatgtgtaaagt |
6934051 |
T |
|
| Q |
248 |
aaaatactttaaac--atcatatagtaggataag |
279 |
Q |
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| T |
6934052 |
aaaatactttaaacatatcatatagtaggataag |
6934085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 112 - 269
Target Start/End: Original strand, 6953187 - 6953349
Alignment:
| Q |
112 |
caaattatcaccttgtgtgcaaaataaatctgaaaacaaggtaaatgtatccaaatcaaaatgaaaatttattccaataaacaac-atttatagtatagt |
210 |
Q |
| |
|
|||| ||||||||||||| ||||||||||| |||| || || |||||||||||||||||||| ||||| |||||||||||||||| | ||| |||| ||| |
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| T |
6953187 |
caaactatcaccttgtgtacaaaataaatcagaaagcatggaaaatgtatccaaatcaaaataaaaatgtattccaataaacaacaaattagagtaaagt |
6953286 |
T |
|
| Q |
211 |
aggaaacaacctatgaatgtacc----aacatatgtaatgtaaaatactttaaacatcatata |
269 |
Q |
| |
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||||||||||||||||||||| | ||||| ||||||||||||| | |||||||||||||| |
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| T |
6953287 |
aggaaacaacctatgaatgtagcaagaaacatgtgtaatgtaaaatgccttaaacatcatata |
6953349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 111 - 269
Target Start/End: Original strand, 6920016 - 6920179
Alignment:
| Q |
111 |
gcaaattatcaccttgtgtgcaaaataaatctgaaaacaaggtaaatgtatccaaatcaaaatgaaaatttattccaataaacaac-atttatagtatag |
209 |
Q |
| |
|
||||| ||||| | ||||| |||||| |||| |||| |||||||| ||||||||||||||||| ||||| |||||||||||||||| | ||| |||| || |
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| T |
6920016 |
gcaaactatcaacatgtgtacaaaatgaatcagaaagcaaggtaattgtatccaaatcaaaataaaaatgtattccaataaacaacaaattagagtaaag |
6920115 |
T |
|
| Q |
210 |
taggaaacaacctatgaatgtacc----aacatatgtaatgtaaaatactttaaacatcatata |
269 |
Q |
| |
|
|||||||||||||||||||||| | ||||| ||||||||||||| | || ||||||||||| |
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| T |
6920116 |
taggaaacaacctatgaatgtagcaagaaacatgtgtaatgtaaaatgccttgaacatcatata |
6920179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 117 - 267
Target Start/End: Original strand, 6941689 - 6941843
Alignment:
| Q |
117 |
tatcaccttgtgtgcaaaataaatctgaaaacaaggtaaatgtatccaaatcaaaatgaaaatttattccaataaacaacatttatagtatagtaggaaa |
216 |
Q |
| |
|
||||| |||| || |||||| |||| |||| ||| |||||| ||||||||||||||| |||||| | || ||||||||||||||||||| ||||||||| |
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| T |
6941689 |
tatcaacttgcgtacaaaattaatcagaaagcaaagtaaatatatccaaatcaaaataaaaattgagtctaataaacaacatttatagtgaagtaggaaa |
6941788 |
T |
|
| Q |
217 |
caacctatgaatgtacc----aacatatgtaatgtaaaatactttaaacatcata |
267 |
Q |
| |
|
||||||||||||| ||| ||||| ||||||||||||| | |||||||||||| |
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|
| T |
6941789 |
caacctatgaatgaaccaagaaacatgtgtaatgtaaaattccttaaacatcata |
6941843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 290 - 349
Target Start/End: Original strand, 6920238 - 6920297
Alignment:
| Q |
290 |
ttgatctaaacaaggtagaaataacagttgatgtaaactactttatatgagcatgatcag |
349 |
Q |
| |
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|||||||||||||||||| | |||||||||||| ||| |||| ||||||||||||||| |
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| T |
6920238 |
ttgatctaaacaaggtagcattaacagttgatgagaacctctttgtatgagcatgatcag |
6920297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 3e-27; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 10 - 76
Target Start/End: Complemental strand, 31762645 - 31762579
Alignment:
| Q |
10 |
gaaatattatataagttgacaactctaacaagtaaataactatagcctagttgctatattttcattc |
76 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
31762645 |
gaaatattatataagttgacaactctaacaagtaaataactatagcccagttgctatattttcattc |
31762579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 31768968 - 31768903
Alignment:
| Q |
11 |
aaatattatataagttgacaactctaacaagtaaataactatagcctagttgctatattttcattc |
76 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31768968 |
aaatattttataagttgacaactctaacaagtaaataactatagcctagttgctatattttcattc |
31768903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 31754958 - 31754897
Alignment:
| Q |
18 |
atataagttgacaactctaacaagta---aataactatagcctagttgctatattttcattc |
76 |
Q |
| |
|
||||| ||||| |||||||||||||| ||||||||| ||||||||||||||||||||||| |
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|
| T |
31754958 |
atataggttgataactctaacaagtagtaaataactatggcctagttgctatattttcattc |
31754897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 118 - 218
Target Start/End: Original strand, 1984444 - 1984544
Alignment:
| Q |
118 |
atcaccttgtgtgcaaaataaatctgaaaacaaggtaaatgtatccaaatcaaaatgaaaatttattccaataaacaacatttatagtatagtaggaaac |
217 |
Q |
| |
|
|||| ||||||| |||||| |||| |||| ||| |||||| ||||||||||||||| ||| || |||||||||||||||| |||||||| || ||||||| |
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| T |
1984444 |
atcaacttgtgtacaaaatgaatcagaaagcaacgtaaatatatccaaatcaaaataaaatttgattccaataaacaacacttatagtaaagaaggaaac |
1984543 |
T |
|
| Q |
218 |
a |
218 |
Q |
| |
|
| |
|
|
| T |
1984544 |
a |
1984544 |
T |
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