View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11582_low_24 (Length: 360)
Name: NF11582_low_24
Description: NF11582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11582_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 18 - 349
Target Start/End: Complemental strand, 16290534 - 16290202
Alignment:
| Q |
18 |
attgtcatgtccttctccacggccaaagcatgttcatcctaagttgccagactatgatgactttgttgctactctcatggctcttcagagagagttcgct |
117 |
Q |
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| T |
16290534 |
attgtcatgtccttctccacggccaaagcatgttcatcctaagttgccagactatgatgactttgttgctactctcatggctcttcagagagagttcact |
16290435 |
T |
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| Q |
118 |
cttagagcagattaggtgtaactgtacacattcttgttaaattagctttctagtttctacc-attgatattaccgaagtaatttttgacatttacccctt |
216 |
Q |
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| T |
16290434 |
catagagcagattaggtgtaactgtacacattcttgttaaattagctttctagtttctacccattgatattaccgaagtaatttttgacatttacccctt |
16290335 |
T |
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| Q |
217 |
catattagatttgtagtttccatcattgatgataccttcaagttattctttgaaaatgacaacttcatatttgatttgtaatgattgatcatttttgttg |
316 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16290334 |
catattagatttgtagtttccatcattgatgacaccttcaagttattctttgaaaatgacaacttcatatttgatttgtaatgattgatcatttttgttg |
16290235 |
T |
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| Q |
317 |
ccttattctatttctattagctttgagtttctt |
349 |
Q |
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| T |
16290234 |
ccttattctatttctattagctttgagtttctt |
16290202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 38323845 - 38323900
Alignment:
| Q |
22 |
tcatgtccttctccacggccaaagcatgttcatcctaagttgccagactatgatga |
77 |
Q |
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||||||||||||| || ||||| ||||||||||||||||||||||| |||||||| |
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| T |
38323845 |
tcatgtccttctcaacatccaaatcatgttcatcctaagttgccagattatgatga |
38323900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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