View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11582_low_25 (Length: 359)
Name: NF11582_low_25
Description: NF11582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11582_low_25 |
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Alignment Details
Target: chr6 (Bit Score: 176; Significance: 9e-95; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 162 - 353
Target Start/End: Original strand, 7767507 - 7767698
Alignment:
| Q |
162 |
gctgccttccacttgaagaggtttaagacagatggggtttttgttgaaaagattgacaagcatatcgatttccagatgcaattggacatgcagccttaca |
261 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
7767507 |
gctgccttccacttgaagaggtttaagacagatggggtttttgttgaaaagattgacaagcatatcgatttccagttgcaattggacatgcagccttaca |
7767606 |
T |
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| Q |
262 |
ccatttccaatgatgcatcgtctaaatactatttatatgcagttgttgtccatactggaatttcatctacttcagggcattatctctgcttc |
353 |
Q |
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| T |
7767607 |
ccatttcgaatgatgcatcgtctaaatactatctatatgcagttgttgtccatactggaatttcatctacttcagggcattatttctgcttc |
7767698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 162 - 353
Target Start/End: Original strand, 7773642 - 7773833
Alignment:
| Q |
162 |
gctgccttccacttgaagaggtttaagacagatggggtttttgttgaaaagattgacaagcatatcgatttccagatgcaattggacatgcagccttaca |
261 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
7773642 |
gctgccttccacttgaagaggtttaagacagatggggtttttgttgaaaagattgacaagcatatcgatttccagttgcaattggacatgcagccttaca |
7773741 |
T |
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| Q |
262 |
ccatttccaatgatgcatcgtctaaatactatttatatgcagttgttgtccatactggaatttcatctacttcagggcattatctctgcttc |
353 |
Q |
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| T |
7773742 |
ccatttcgaatgatgcatcgtctaaatactatctatatgcagttgttgtccatactggaatttcatctacttcagggcattatttctgcttc |
7773833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 19 - 164
Target Start/End: Original strand, 7767336 - 7767481
Alignment:
| Q |
19 |
aatgagccattgattgatttgagtctagaaatagaaaatgtagaaactctttcaagtgctttagattctttcactacggtggaagatattgatgtgaagt |
118 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
7767336 |
aatgaaccattgattgatttgagtctagaaatagaaaatgtagaaactctttcaagtgctttagattctttcactacggtggaagatattgatgcgaagt |
7767435 |
T |
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| Q |
119 |
ttaaatgcgagggctgcaacgaagaagtttctatggagaaacagct |
164 |
Q |
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| T |
7767436 |
ttaaatgcgagggctgcaacgaagaagtttctatggagaaacagct |
7767481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 19 - 164
Target Start/End: Original strand, 7778306 - 7778451
Alignment:
| Q |
19 |
aatgagccattgattgatttgagtctagaaatagaaaatgtagaaactctttcaagtgctttagattctttcactacggtggaagatattgatgtgaagt |
118 |
Q |
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|||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||| ||||||||||||| |||| |
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| T |
7778306 |
aatgagccatcgattgatttgagtctagaaatagaaaatgcagatactctttcaagtgctttagattctttcacaacggtagaagatattgatgcaaagt |
7778405 |
T |
|
| Q |
119 |
ttaaatgcgagggctgcaacgaagaagtttctatggagaaacagct |
164 |
Q |
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| T |
7778406 |
ttaaatgtgagggctgcaatgaagaagtttctatggagaaacagct |
7778451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 19 - 161
Target Start/End: Original strand, 7773471 - 7773613
Alignment:
| Q |
19 |
aatgagccattgattgatttgagtctagaaatagaaaatgtagaaactctttcaagtgctttagattctttcactacggtggaagatattgatgtgaagt |
118 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||| | ||||| | ||||| |
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| T |
7773471 |
aatgagccattgattgattttagtctagaaatagaaaatgtagatactctttcaagtgctttagaatctttcactatggtggaacacattgacgcgaagt |
7773570 |
T |
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| Q |
119 |
ttaaatgcgagggctgcaacgaagaagtttctatggagaaaca |
161 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||| |
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| T |
7773571 |
ttaaatgcgagggctgcaacgaagaagtgtctatggagaaaca |
7773613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 162 - 344
Target Start/End: Original strand, 7778477 - 7778659
Alignment:
| Q |
162 |
gctgccttccacttgaagaggtttaagacagatggggtttttgttgaaaagattgacaagcatatcgatttccagatgcaattggacatgcagccttaca |
261 |
Q |
| |
|
||||| ||||| || ||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||| | || | ||||||||||||||||||| |
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| T |
7778477 |
gctgcgttccatttaaagaggtttaagacatatgggatttttgttgaaaagattgacaagcatatcaatttcccgttggagttggacatgcagccttaca |
7778576 |
T |
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| Q |
262 |
ccatttccaatgatgcatcgtctaaatactatttatatgcagttgttgtccatactggaatttcatctacttcagggcattat |
344 |
Q |
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|||| || |||||||||||||| ||||| || | |||||||| ||||| ||||||||| ||||||||||||||||||||||| |
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| T |
7778577 |
ccatatcgaatgatgcatcgtccaaatatgatctgtatgcagtagttgtgcatactggattttcatctacttcagggcattat |
7778659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 19 - 164
Target Start/End: Complemental strand, 12753826 - 12753681
Alignment:
| Q |
19 |
aatgagccattgattgatttgagtctagaaatagaaaatgtagaaactctttcaagtgctttagattctttcactacggtggaagatattgatgtgaagt |
118 |
Q |
| |
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|||||||| |||||||| ||||||||||||||||||||||||| || |||||||||| || || |||||||| | ||||||| | ||||||| ||| |
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| T |
12753826 |
aatgagccgttgattgacctgagtctagaaatagaaaatgtagattctatttcaagtgcattggagtctttcacaatggtggaaaacattgatgctaagc |
12753727 |
T |
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| Q |
119 |
ttaaatgcgagggctgcaacgaagaagtttctatggagaaacagct |
164 |
Q |
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||||||| ||||||||||| |||||||| ||| ||||||||||||| |
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| T |
12753726 |
ttaaatgtgagggctgcaatgaagaagtgtctgtggagaaacagct |
12753681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 19 - 164
Target Start/End: Complemental strand, 12816786 - 12816641
Alignment:
| Q |
19 |
aatgagccattgattgatttgagtctagaaatagaaaatgtagaaactctttcaagtgctttagattctttcactacggtggaagatattgatgtgaagt |
118 |
Q |
| |
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||||||| |||||||| ||||||||||||||||||||||||| || |||||||||| || || |||||||| | ||||||| | ||||||| ||| |
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| T |
12816786 |
aatgagcagttgattgacctgagtctagaaatagaaaatgtagattctatttcaagtgcattggagtctttcacaatggtggaaaacattgatgctaagc |
12816687 |
T |
|
| Q |
119 |
ttaaatgcgagggctgcaacgaagaagtttctatggagaaacagct |
164 |
Q |
| |
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||||||| ||||||||||| |||||||| ||| ||||||||||||| |
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| T |
12816686 |
ttaaatgtgagggctgcaatgaagaagtgtctgtggagaaacagct |
12816641 |
T |
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