View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11582_low_29 (Length: 349)
Name: NF11582_low_29
Description: NF11582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11582_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 332
Target Start/End: Original strand, 3373679 - 3374010
Alignment:
| Q |
1 |
atctgatatgatccggtgtgtagtaaaacaccacctttgtggtaattagtactcggtgtcggtgacaagtttactgaattctcagtactctttccaatgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3373679 |
atctgatatgatccggtgtgtagtaaaacaccacctttgtggtaattagtactcggtgtcggtgacaagtttactgaattctcagtactctttccaatgg |
3373778 |
T |
|
| Q |
101 |
attgatatgtatcaggtagtggtcggcagttttatggcaaatgaacagcatgagcagaagctagaaacgcagaaaaatgaggtaacttcaaccgttacac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3373779 |
attgatatgtatcaggtagtggtcggcagttttatggcaaatgaacagcatgagcagaagctagaaacgcagaaaaatgaggtaacttcaaccgttacac |
3373878 |
T |
|
| Q |
201 |
caacggcagctgctcccgtgtctactgctggtacaatacctaacctctcatctccatcttccttccatggagattattctttctttgtgatcgtgcacgt |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3373879 |
caacggcagctgctcccgtgtctactgctggtacaatacctaacctctcatctccatcttccttccatggagattattctttctttgtgatcgtgcacgt |
3373978 |
T |
|
| Q |
301 |
atcttgattgaaatagttgtgaaggaggttca |
332 |
Q |
| |
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||||||||||||| |||||||||||||||||| |
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| T |
3373979 |
atcttgattgaaacagttgtgaaggaggttca |
3374010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 77 - 327
Target Start/End: Original strand, 3401889 - 3402140
Alignment:
| Q |
77 |
aattctcagtactctttccaatggattgatatgtatcaggtagtggtcggcagttttatggcaaatgaacagcatgagcagaagctagaaacgcagaaaa |
176 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||| |||||| | ||| |||||||||| |||||||| |||| |||| ||| ||| |
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| T |
3401889 |
aattctcattactctttccaatggattgatatgtatcaggtagtggtaagcagttctctgggaaatgaacagtctgagcagatgctaaaaacacaggaaa |
3401988 |
T |
|
| Q |
177 |
atgaggtaacttcaaccgttacaccaacggcagctgctcccgtgtctactgctggtacaatacctaacctctcatctccatcttccttccatggagatta |
276 |
Q |
| |
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||||||| ||| |||| || |||||||||||| | ||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||| | |
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| T |
3401989 |
atgaggtgactccaacatcaacgccaacggcagctccacccgtgtctactgctggtacaatacctaa-ctctcatcttcatcttccttccacggagatga |
3402087 |
T |
|
| Q |
277 |
t--tctttctttgtgatcgtgcacgtatcttgattgaaatagttgtgaaggag |
327 |
Q |
| |
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| ||||||||||||||| ||| ||| || || ||||||| ||||||||||| |
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| T |
3402088 |
ttctctttctttgtgatcatgcgcgtttcatggttgaaatgattgtgaaggag |
3402140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 86 - 292
Target Start/End: Original strand, 3377977 - 3378184
Alignment:
| Q |
86 |
tactctttccaatggattgatatgtatcaggtagtggtcggcagttttatggcaaatgaacagcatgagcagaagctagaaacgcagaaaaatgaggtaa |
185 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||| ||||| | |||||||||| | |
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|
| T |
3377977 |
tactctttccagtggattgatatgtatcaggtagtggtaagcagttttctggcaaatgaacagtccgagcagaagctaagaacgcgggaaaatgaggtga |
3378076 |
T |
|
| Q |
186 |
cttcaaccgttacaccaacggcagctgctcccgtgtctactgctggtacaatacctaacctctcatctccatcttccttccatggagatta--ttctttc |
283 |
Q |
| |
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||||||| | || |||| |||||||||||| |||||||||||||||||||||||| | || |||||| ||||||||||||| |||||| | |||||| |
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| T |
3378077 |
cttcaacattaacgccaatggcagctgctcctgtgtctactgctggtacaatacctta-ctttcatcttcatcttccttccacggagatgagtctctttc |
3378175 |
T |
|
| Q |
284 |
tttgtgatc |
292 |
Q |
| |
|
||||||||| |
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|
| T |
3378176 |
tttgtgatc |
3378184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 62 - 192
Target Start/End: Original strand, 3403244 - 3403371
Alignment:
| Q |
62 |
gtgacaagtttactgaattctcagtactctttccaatggattgatatgtatcaggtagtggtcggcagttttatggcaaatgaacagcatgagcagaagc |
161 |
Q |
| |
|
|||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||| || ||| |||| ||||||||||||| |
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| T |
3403244 |
gtgacaagtttatgcaattatcatcactctttccaatggattgatatgtatcaggtagtggtaggcagttttctgccaagtgaa---catgagcagaagc |
3403340 |
T |
|
| Q |
162 |
tagaaacgcagaaaaatgaggtaacttcaac |
192 |
Q |
| |
|
|| |||| ||||| |||||||||| |||||| |
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|
| T |
3403341 |
taaaaacacagaataatgaggtaatttcaac |
3403371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 137 - 237
Target Start/End: Original strand, 3369222 - 3369322
Alignment:
| Q |
137 |
gcaaatgaacagcatgagcagaagctagaaacgcagaaaaatgaggtaacttcaaccgttacaccaacggcagctgctcccgtgtctactgctggtacaa |
236 |
Q |
| |
|
|||| |||||| ||||||||||||||| | || ||||| |||||||||| |||||| || || ||||| | |||||||| | ||||| |||||||| ||| |
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| T |
3369222 |
gcaagtgaacaacatgagcagaagctaaacacacagaagaatgaggtaatttcaacagtaacgccaactgtagctgctcgcatgtcttctgctggtccaa |
3369321 |
T |
|
| Q |
237 |
t |
237 |
Q |
| |
|
| |
|
|
| T |
3369322 |
t |
3369322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 137 - 237
Target Start/End: Original strand, 3394839 - 3394939
Alignment:
| Q |
137 |
gcaaatgaacagcatgagcagaagctagaaacgcagaaaaatgaggtaacttcaaccgttacaccaacggcagctgctcccgtgtctactgctggtacaa |
236 |
Q |
| |
|
|||| |||||| ||||||||||||||| | || ||||| |||||||||| |||||| || || ||||| | |||||||| | ||||| |||||||| ||| |
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| T |
3394839 |
gcaagtgaacaacatgagcagaagctaaacacacagaagaatgaggtaatttcaacagtaacgccaactgtagctgctcgcatgtcttctgctggtccaa |
3394938 |
T |
|
| Q |
237 |
t |
237 |
Q |
| |
|
| |
|
|
| T |
3394939 |
t |
3394939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 63 - 118
Target Start/End: Original strand, 3379876 - 3379931
Alignment:
| Q |
63 |
tgacaagtttactgaattctcagtactctttccaatggattgatatgtatcaggta |
118 |
Q |
| |
|
||||||||||| | |||||| | ||||||||||||||||||||||||| ||||||| |
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|
| T |
3379876 |
tgacaagtttattcaattctaattactctttccaatggattgatatgtgtcaggta |
3379931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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