View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11582_low_32 (Length: 334)
Name: NF11582_low_32
Description: NF11582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11582_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 305; Significance: 1e-172; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 19 - 327
Target Start/End: Original strand, 31945366 - 31945674
Alignment:
| Q |
19 |
ggtttgtagatggatttgcagttgttaagtcttcaattgatccaataagtgatttcaaagaatcaatggtggagatgattgtggagaataatataaggga |
118 |
Q |
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| T |
31945366 |
ggtttgtagatggatttgcagttgttaagtcttcaattgatccaataagtgatttcaaagaatcaatggtggagatgattgtggagaataatataaggga |
31945465 |
T |
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| Q |
119 |
atcaaaggatttggaggatttacttgcttgctatctttctcttaattcaagtgaatatcatgatgttatagttaaagcttttgagcaaatttggtatgac |
218 |
Q |
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| T |
31945466 |
atcaaaggatttggaggatttacttgcttgctatctttctcttaattcaagtgaatatcatgatgttatagttaaagcttttgagcaaatttggtatgac |
31945565 |
T |
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| Q |
219 |
atggcccaacttagaatgtaaagatcttattattttcaatgcatgtttataagtcttgtaattaattacaaccactctatggattaaacttctgttctga |
318 |
Q |
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| T |
31945566 |
atggctcaacttagaatgtaaagatcttattattttcaatgcatgtttataagtcttgtaattaattacaaccactctatggattaaacttctgttctga |
31945665 |
T |
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| Q |
319 |
ttcttctct |
327 |
Q |
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| T |
31945666 |
ttcttctct |
31945674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 81 - 187
Target Start/End: Complemental strand, 9948924 - 9948818
Alignment:
| Q |
81 |
tcaatggtggagatgattgtggagaataatataagggaatcaaaggatttggaggatttacttgcttgctatctttctcttaattcaagtgaatatcatg |
180 |
Q |
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| T |
9948924 |
tcaatggtggagatgattgtggagaataacataagagcatcaaaggatttggaagatcttcttgcttgttatctttctttgaattcagatgagtatcatg |
9948825 |
T |
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| Q |
181 |
atgttat |
187 |
Q |
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| T |
9948824 |
atcttat |
9948818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 69 - 181
Target Start/End: Original strand, 27066055 - 27066167
Alignment:
| Q |
69 |
gatttcaaagaatcaatggtggagatgattgtggagaataatataagggaatcaaaggatttggaggatttacttgcttgctatctttctcttaattcaa |
168 |
Q |
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||||||| |||||||||||||||||||||||| |||| || || || ||||||||||||||| ||| | |||||||| || |||||| | |||||| |
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| T |
27066055 |
gatttcagagaatcaatggtggagatgattgttcagaacaacattagaacatcaaaggatttggaagatcttcttgcttgttacctttctttgaattcag |
27066154 |
T |
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| Q |
169 |
gtgaatatcatga |
181 |
Q |
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| T |
27066155 |
atgagtatcatga |
27066167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 69 - 181
Target Start/End: Complemental strand, 27212258 - 27212146
Alignment:
| Q |
69 |
gatttcaaagaatcaatggtggagatgattgtggagaataatataagggaatcaaaggatttggaggatttacttgcttgctatctttctcttaattcaa |
168 |
Q |
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||||||| |||||||||||||||||||||||| |||| || || || ||||||||||||||| ||| | |||||||| || |||||| | |||||| |
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| T |
27212258 |
gatttcagagaatcaatggtggagatgattgttcagaacaacattagaacatcaaaggatttggaagatcttcttgcttgttacctttctttgaattcag |
27212159 |
T |
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| Q |
169 |
gtgaatatcatga |
181 |
Q |
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||| |||||||| |
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| T |
27212158 |
atgagtatcatga |
27212146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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