View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11582_low_34 (Length: 320)

Name: NF11582_low_34

Description: NF11582

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF11582_low_34

[»] chr3 (1 HSPs)

Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 1)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 190; E-Value: 1e-103

Query Start/End: Original strand, 19 - 320

Target Start/End: Original strand, 52087252 - 52087550

Alignment:

Q	19	ggtattgtgactaaaaagatcaaatattcgctcagccctcacatcacaaaatgtgcaaccgtcaaactgatcaagcctacatggcacaataaacaatcta	118	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	52087252	ggtattgtgactaaaaagatcaaatattcgctcagccctcacatcacaaaatgtgcaaccgtcaaactgatcaagcctacatggcacaataaacaatcta	52087351	T

Q	119	taaaatagagcaactcaactcgctnnnnnnnncatgnnnnnnnnnnnnntcatatacttagaaaatacctaaaagctctttnnnnnnnccc-cataactt	217	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|
T	52087352	taaaatacagcaactcaactcgctaaaaaaaacatg----cacacacactcatatacttagaaaatacctaaaagctctttaaaaacccccatataactt	52087447	T

Q	218	gagtattagaatgtctttgcaggtacaccatcatgcttcaatgaagaacagtcatacacaggtgttgtgtgggagcgatgttctcacaatactttcttgt	317	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	52087448	gagtattagaatgtctttgcaggtacaccatcgtgcttcaatgaagaacagtcgtacacaggtgttgtgtgggagcgatgttctcacaatactttcttgt	52087547	T

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