View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11582_low_39 (Length: 286)
Name: NF11582_low_39
Description: NF11582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11582_low_39 |
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Alignment Details
Target: chr5 (Bit Score: 159; Significance: 1e-84; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 15 - 194
Target Start/End: Original strand, 28398009 - 28398184
Alignment:
| Q |
15 |
cataggacaaccactaattcaagagttccaactatttgttacgacattctagcagtcttcataaagtgtccacaacttgagaaatctaaatttgtcatag |
114 |
Q |
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| T |
28398009 |
cataggacaaccactaattcaagagttccaactatttgttacgacattctagcagtcttcataaagtgtccacaacttgagaaatctaaatttgtcatag |
28398108 |
T |
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| Q |
115 |
catgaggttgtcactatttctaattaatttcattgatacaaaactgaaaaattataataggaaaaatgttataccaatgt |
194 |
Q |
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| T |
28398109 |
catgaggttgtcactatttc----taatttcattgatacaaaactgaaaaataataataggaaaaatgttataccaatgt |
28398184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 196 - 282
Target Start/End: Original strand, 28398248 - 28398333
Alignment:
| Q |
196 |
atatttgtgagtgataaatataaat-aaaaaatacgagacaaatatttgtgagtgatatggatattcttacattttttcagcatctat |
282 |
Q |
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| T |
28398248 |
atatttgtgagtgataaatataaataaaaaaatacgagacaaatatttgtgagtg--atgaatattcttacattttttcagcatctat |
28398333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 198 - 272
Target Start/End: Original strand, 28390398 - 28390470
Alignment:
| Q |
198 |
atttgtgagtgataaatataaataaaaaatacgagacaaatatttgtgagtgatatggatattcttacatttttt |
272 |
Q |
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| T |
28390398 |
atttgtgggtgataaatataaatcaaatatacgggaccaatatttgtgagtg--atggacattcttacatttttt |
28390470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 252
Target Start/End: Complemental strand, 43488118 - 43488063
Alignment:
| Q |
196 |
atatttgtgagtgataaatataaataaaaaatacgagacaaatatttgtgagtgata |
252 |
Q |
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| T |
43488118 |
atatttgtcactgataaatataa-taaaaaatacgggacaaatatttgttagtgata |
43488063 |
T |
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