View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11582_low_4 (Length: 720)

Name: NF11582_low_4
Description: NF11582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11582_low_4
NF11582_low_4
[»] chr3 (5 HSPs)
chr3 (232-589)||(5353544-5353902)
chr3 (450-598)||(32994959-32995107)
chr3 (43-110)||(5353996-5354063)
chr3 (151-210)||(5353892-5353955)
chr3 (522-598)||(44064223-44064299)
[»] chr2 (6 HSPs)
chr2 (467-633)||(37720037-37720203)
chr2 (633-704)||(11594169-11594240)
chr2 (633-704)||(11606085-11606156)
chr2 (533-598)||(24727855-24727920)
chr2 (657-704)||(11613468-11613515)
chr2 (450-495)||(24727930-24727975)
[»] chr6 (1 HSPs)
chr6 (450-591)||(279586-279727)
[»] chr8 (2 HSPs)
chr8 (450-593)||(7423525-7423668)
chr8 (450-594)||(25877474-25877618)
[»] chr5 (1 HSPs)
chr5 (467-632)||(31148328-31148493)
[»] chr4 (7 HSPs)
chr4 (450-590)||(42545429-42545569)
chr4 (491-588)||(36514041-36514138)
chr4 (467-593)||(25891865-25891991)
chr4 (467-598)||(54117051-54117182)
chr4 (505-572)||(54713027-54713094)
chr4 (450-506)||(54713243-54713299)
chr4 (536-593)||(43781026-43781083)
[»] chr7 (1 HSPs)
chr7 (467-598)||(9045166-9045297)


Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-104; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 232 - 589
Target Start/End: Complemental strand, 5353902 - 5353544
Alignment:
Q  232 agaattccagatttgttaaaaagttattttgagtttgaactacgtacgacgaacaattggnnnnnnnnnnnnggaatgctttgagtgtaatttttatttt 331  Q
    ||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||            ||||||||||||||||||||||||||||    
T  5353902 agaattccagatttgttaaaaagttattttgagtttgtactatgtacgatgaacaattggtttttttttgttggaatgctttgagtgtaatttttatttt 5353803  T
Q  332 tgcattnnnnnnnnnntcatcatggtctgggttgttttacaattggtt-ttcttgttgtgtgggattctttagggaagagagatattctaatgcag-aga 429  Q
    ||||||          |||||||| |||||||||||||||||| |||| ||||| ||||||| |||| |  || |||||||||||||||||||||| |||    
T  5353802 tgcattaaaaaaaaa-tcatcatgttctgggttgttttacaatcggttcttcttcttgtgtgtgattttacagtgaagagagatattctaatgcaggaga 5353704  T
Q  430 accaaaatcaattgaaagatatactaaacagaagatattatttaattatgaggtggggtcacaatttttattttatataacccaacaaaaagttaacagg 529  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||    
T  5353703 accaaaatcaattgaaagatatacaaaacagaagatattatttacttatgaggttgggtcacaatttttgttttatataacccaacaaaaagttagcagg 5353604  T
Q  530 taataaatctgagtcatccaaattataaagtattaaatctatggtcttggtttaactttc 589  Q
    ||||||||||||  ||||||||||||||| ||||||||||||| ||||||||||||||||    
T  5353603 taataaatctgaaccatccaaattataaaatattaaatctatgatcttggtttaactttc 5353544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 450 - 598
Target Start/End: Complemental strand, 32995107 - 32994959
Alignment:
Q  450 atactaaacagaagatattatttaattatgaggtggggtcacaatttttattttatataacccaacaaaaagttaacaggtaataaatctgagtcatcca 549  Q
    |||| ||| |||| || |||||||| |||||||||| |||||||||||| |||||||||||||| ||||||||||| ||| ||| ||||| |  ||||||    
T  32995107 atacaaaaaagaaaatgttatttaaatatgaggtggagtcacaatttttgttttatataacccatcaaaaagttaataggcaatgaatctaaaccatcca 32995008  T
Q  550 aattataaagtattaaatctatggtcttggtttaactttcccataatgg 598  Q
    ||||| ||| |||||||||||||  ||||||||||||||||||| ||||    
T  32995007 aattaaaaaatattaaatctatgaccttggtttaactttcccatgatgg 32994959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 43 - 110
Target Start/End: Complemental strand, 5354063 - 5353996
Alignment:
Q  43 aaagcctggttcagaaacttgaaagattgaaacttgaaatcactcctattatagtttgctgaagaatt 110  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5354063 aaaggctggttcagaaacttgaaagattgaaacttgaaatcactcctattatagtttgctgaagaatt 5353996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 151 - 210
Target Start/End: Complemental strand, 5353955 - 5353892
Alignment:
Q  151 tgatttttaatcatattgctcactacgtacatactgtgag----atgaatcatagaattccaga 210  Q
    |||||||||||||||||| |||||||||||||||||||||    ||||||||||||||||||||    
T  5353955 tgatttttaatcatattgttcactacgtacatactgtgaggtgaatgaatcatagaattccaga 5353892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 522 - 598
Target Start/End: Complemental strand, 44064299 - 44064223
Alignment:
Q  522 ttaacaggtaataaatctgagtcatccaaattataaagtattaaatctatggtcttggtttaactttcccataatgg 598  Q
    |||| |||| |||||||| || ||| ||||| | |||||||||||||||||||  ||||| ||||||||||| ||||    
T  44064299 ttaataggtcataaatcttagccattcaaataaaaaagtattaaatctatggttgtggttcaactttcccatgatgg 44064223  T

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Target: chr2 (Bit Score: 114; Significance: 2e-57; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 467 - 633
Target Start/End: Complemental strand, 37720203 - 37720037
Alignment:
Q  467 ttatttaattatgaggtggggtcacaatttttattttatataacccaacaaaaagttaacaggtaataaatctgagtcatccaaattataaagtattaaa 566  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||| |||||||    
T  37720203 ttatttaattatgaggtggggtcacaatttttgttttatataacccaacaaaaagttagcaggtaatgaatctgagccatccaaattataaaatattaaa 37720104  T
Q  567 tctatggtcttggtttaactttcccataatggnnnnnnngtttgcttttccaaattaaacagcaccc 633  Q
    ||||||||||||||||||||||||||| ||||       ||||||||| ||||||||||| ||||||    
T  37720103 tctatggtcttggtttaactttcccatgatggaaaaaaagtttgctttcccaaattaaacggcaccc 37720037  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 633 - 704
Target Start/End: Complemental strand, 11594240 - 11594169
Alignment:
Q  633 caagaacaaaccataactcatcataaaactaaagataggttacatctgattatctttagggaagacctaact 704  Q
    ||||||||||||||||||| ||||||| ||||||||||||| |||||||| |||||| ||||||||||||||    
T  11594240 caagaacaaaccataactcctcataaatctaaagataggttccatctgatgatctttggggaagacctaact 11594169  T

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Target: chr2; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 633 - 704
Target Start/End: Complemental strand, 11606156 - 11606085
Alignment:
Q  633 caagaacaaaccataactcatcataaaactaaagataggttacatctgattatctttagggaagacctaact 704  Q
    ||||||||||||||||||| ||||||| ||||||||||||| |||||||| |||||| ||||||||||||||    
T  11606156 caagaacaaaccataactcctcataaatctaaagataggttccatctgatgatctttggggaagacctaact 11606085  T

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Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 533 - 598
Target Start/End: Complemental strand, 24727920 - 24727855
Alignment:
Q  533 taaatctgagtcatccaaattataaagtattaaatctatggtcttggtttaactttcccataatgg 598  Q
    ||||| |||| |||||||||| ||||||||||||||||||| |||||||||||||| |||| ||||    
T  24727920 taaatttgagccatccaaattttaaagtattaaatctatggccttggtttaacttttccatgatgg 24727855  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 657 - 704
Target Start/End: Complemental strand, 11613515 - 11613468
Alignment:
Q  657 aaaactaaagataggttacatctgattatctttagggaagacctaact 704  Q
    ||||||||||||||||| |||||| | |||||| ||||||||||||||    
T  11613515 aaaactaaagataggttccatctgttgatctttggggaagacctaact 11613468  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 450 - 495
Target Start/End: Complemental strand, 24727975 - 24727930
Alignment:
Q  450 atactaaacagaagatattatttaattatgaggtggggtcacaatt 495  Q
    |||| ||| |||| || |||||||||||||||||||||||||||||    
T  24727975 atacaaaaaagaaaatgttatttaattatgaggtggggtcacaatt 24727930  T

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Target: chr6 (Bit Score: 110; Significance: 5e-55; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 450 - 591
Target Start/End: Complemental strand, 279727 - 279586
Alignment:
Q  450 atactaaacagaagatattatttaattatgaggtggggtcacaatttttattttatataacccaacaaaaagttaacaggtaataaatctgagtcatcca 549  Q
    |||| ||| |||| || |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  279727 atacaaaaaagaaaatgttatttaattatgaggtggggtcacaatttttgttttatataacccatcaaaaagttaacaggtaatgaatctgagtcatcca 279628  T
Q  550 aattataaagtattaaatctatggtcttggtttaactttccc 591  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  279627 aattaaaaagtattaaatctatggtcttggtttaactttccc 279586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 104; Significance: 2e-51; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 450 - 593
Target Start/End: Complemental strand, 7423668 - 7423525
Alignment:
Q  450 atactaaacagaagatattatttaattatgaggtggggtcacaatttttattttatataacccaacaaaaagttaacaggtaataaatctgagtcatcca 549  Q
    |||| ||| |||| || |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||| |||| ||||||    
T  7423668 atacaaaaaagaaaatgttatttaattatgaggtggggtcacaatttttgttttatataacccatcaaaaagttaacaggtaatgaatatgagccatcca 7423569  T
Q  550 aattataaagtattaaatctatggtcttggtttaactttcccat 593  Q
    ||||| ||||||||||||||||||||||||||||||||||||||    
T  7423568 aattaaaaagtattaaatctatggtcttggtttaactttcccat 7423525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 450 - 594
Target Start/End: Original strand, 25877474 - 25877618
Alignment:
Q  450 atactaaacagaagatattatttaattatgaggtggggtcacaatttttattttatataacccaacaaaaagttaacaggtaataaatctgagtcatcca 549  Q
    |||| ||| |||| || |||||||||||| ||||||||||||||||||| |||||||||||||| |||||| |||||||||||| |||||||| ||||||    
T  25877474 atacaaaaaagaaaatgttatttaattataaggtggggtcacaatttttgttttatataacccatcaaaaaattaacaggtaatgaatctgagccatcca 25877573  T
Q  550 aattataaagtattaaatctatggtcttggtttaactttcccata 594  Q
    ||||| |||||||||||||||||| |||||||||||||| |||||    
T  25877574 aattaaaaagtattaaatctatggccttggtttaacttttccata 25877618  T

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Target: chr5 (Bit Score: 98; Significance: 7e-48; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 467 - 632
Target Start/End: Original strand, 31148328 - 31148493
Alignment:
Q  467 ttatttaattatgaggtggggtcacaatttttattttatataacccaacaaaaagttaacaggtaataaatctgagtcatccaaattataaagtatt-aa 565  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||| ||||||||||| |||||||| ||    
T  31148328 ttatttaattatgaggtggggtcacaatttttgttttatataacccaacaaaaagttaaca-gtagtaaatctgagccatccaaattaaaaagtattaaa 31148426  T
Q  566 atctatggtcttggtttaactttcccataatggnnnnnnngtttgcttttccaaattaaacagcacc 632  Q
    |||||||||||||||||||||||||||| ||||       || |||||| ||||||||||| |||||    
T  31148427 atctatggtcttggtttaactttcccatgatgggaaaaaagtgtgctttcccaaattaaacggcacc 31148493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 97; Significance: 3e-47; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 450 - 590
Target Start/End: Original strand, 42545429 - 42545569
Alignment:
Q  450 atactaaacagaagatattatttaattatgaggtggggtcacaatttttattttatataacccaacaaaaagttaacaggtaataaatctgagtcatcca 549  Q
    |||| ||| |||| || |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||| ||||||    
T  42545429 atacaaaaaagaaaatgttatttaattatgaggtggggtcacaatttttgttttatataacccatcaaaaagttaacaggtaatgaatctgagccatcca 42545528  T
Q  550 aattataaagtattaaatctatggtcttggtttaactttcc 590  Q
    ||||| |||||||||||||||||  ||||||||||||||||    
T  42545529 aattaaaaagtattaaatctatgaccttggtttaactttcc 42545569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 491 - 588
Target Start/End: Complemental strand, 36514138 - 36514041
Alignment:
Q  491 caatttttattttatataacccaacaaaaagttaacaggtaataaatctgagtcatccaaattataaagtattaaatctatggtcttggtttaacttt 588  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||  ||| |||||| |||||||||||||||||||  |||||||||||||    
T  36514138 caatttttgttttatataacccaacaaaaagttaacaggtaataaatctgaaccattcaaattttaaagtattaaatctatggctttggtttaacttt 36514041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 467 - 593
Target Start/End: Original strand, 25891865 - 25891991
Alignment:
Q  467 ttatttaattatgaggtggggtcacaatttttattttatataacccaacaaaaagttaacaggtaataaatctgagtcatccaaattataaagtattaaa 566  Q
    ||||||||||| |||||||||||||| ||||| |||||||||||||| |||||||||||||||| | | |||||||||| |||||||| ||||||||| |    
T  25891865 ttatttaattacgaggtggggtcacagtttttgttttatataacccatcaaaaagttaacaggtcacacatctgagtcacccaaattaaaaagtattata 25891964  T
Q  567 tctatggtcttggtttaactttcccat 593  Q
    || || | | || ||||||||||||||    
T  25891965 tcaattgccatgctttaactttcccat 25891991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 467 - 598
Target Start/End: Original strand, 54117051 - 54117182
Alignment:
Q  467 ttatttaattatgaggtggggtcacaatttttattttatataacccaacaaaaagttaacaggtaataaatctgagtcatccaaattataaagtattaaa 566  Q
    |||||||||||||||||||||||||  ||||| |||||||||||||| |||||||||||||||| | | |||| || | ||||||||| ||||||||| |    
T  54117051 ttatttaattatgaggtggggtcactgtttttgttttatataacccatcaaaaagttaacaggtcacacatctcagccgtccaaattaaaaagtattata 54117150  T
Q  567 tctatggtcttggtttaactttcccataatgg 598  Q
    || ||| || || |||||||||||||| ||||    
T  54117151 tcaatgatcatgctttaactttcccatcatgg 54117182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 505 - 572
Target Start/End: Complemental strand, 54713094 - 54713027
Alignment:
Q  505 tataacccaacaaaaagttaacaggtaataaatctgagtcatccaaattataaagtattaaatctatg 572  Q
    ||||| |||||||||||||||||| ||||||||||||  |||||||||||||| ||||||||||||||    
T  54713094 tataatccaacaaaaagttaacagataataaatctgaaccatccaaattataatgtattaaatctatg 54713027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 450 - 506
Target Start/End: Complemental strand, 54713299 - 54713243
Alignment:
Q  450 atactaaacagaagatattatttaattatgaggtggggtcacaatttttattttata 506  Q
    |||| |||||||| || |||||||||||||| ||||||||||||||||| |||||||    
T  54713299 atacaaaacagaaaatgttatttaattatgatgtggggtcacaatttttgttttata 54713243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 536 - 593
Target Start/End: Original strand, 43781026 - 43781083
Alignment:
Q  536 atctgagtcatccaaattataaagtattaaatctatggtcttggtttaactttcccat 593  Q
    |||| |||||||||||||| ||| ||||||||| |||||  ||||| |||||||||||    
T  43781026 atcttagtcatccaaattaaaaactattaaatccatggttgtggttgaactttcccat 43781083  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 467 - 598
Target Start/End: Original strand, 9045166 - 9045297
Alignment:
Q  467 ttatttaattatgaggtggggtcacaatttttattttatataacccaacaaaaagttaacaggtaataaatctgagtcatccaaattataaagtattaaa 566  Q
    |||||||||||||||||||||||| | ||||| |||||||||| ||| | ||||||||| || ||| | |||| |||| || |||  |  ||||| || |    
T  9045166 ttatttaattatgaggtggggtcatagtttttgttttatataagccatccaaaagttaatagataacacatctcagtcgtcgaaacaaacaagtaatata 9045265  T
Q  567 tctatggtcttggtttaactttcccataatgg 598  Q
    ||||||||| || ||||||||| |||| ||||    
T  9045266 tctatggtcctgctttaacttttccatcatgg 9045297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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