View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11582_low_41 (Length: 278)
Name: NF11582_low_41
Description: NF11582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11582_low_41 |
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Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 7 - 268
Target Start/End: Complemental strand, 2139653 - 2139390
Alignment:
| Q |
7 |
aaaaatgcatagaagaatggatttggaggccattttcttttatatata--gagcaatctgtgagtgttacttgaaacaaatattggaccttgtatatata |
104 |
Q |
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| T |
2139653 |
aaaaatgcatagaagaatggatttggaggccattttcttttatatatatagagcaatctgtgagtgttacttgaaacaaatattggaccttgtatatata |
2139554 |
T |
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| Q |
105 |
gaggtcaagttgggtaggagnnnnnnntgttaggtaaattaaatcaataatgtaatgtacaaagtacaagaataaattgtttaggcgtatacaagttaca |
204 |
Q |
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| T |
2139553 |
gaggtcaagttgggtaggagaaaaaaatgttaggtaaattaaatcaataatgtaatgtacaaagtacaagaataaattgtttaggcgtatacaagttaca |
2139454 |
T |
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| Q |
205 |
ccattgtgcctcttaatatagtgtctgccaaacttgtatagctagtttctcataagagtctgtg |
268 |
Q |
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| T |
2139453 |
ccattgtgcctcttaatatagtgtctgccaaacttgtatagctagtttctcataagagtatgtg |
2139390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 262
Target Start/End: Complemental strand, 2123424 - 2123326
Alignment:
| Q |
165 |
aaagtacaagaataaattgtttaggcgtatacaagttacaccattgtgcctct-taatatagtgtctgccaaacttgtatagctagtttctcataagag |
262 |
Q |
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| T |
2123424 |
aaagtacgagaagaaattgtttaggtgtatacaggttctacccacgtgcctctataacattgtgtctactaaactagtatatctagtttctcataagag |
2123326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 175
Target Start/End: Complemental strand, 2123496 - 2123454
Alignment:
| Q |
133 |
gttaggtaaattaaatcaataatgtaatgtacaaagtacaaga |
175 |
Q |
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| T |
2123496 |
gttaggtgcattaaattaataatgtaatgtacaaagtacaaga |
2123454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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