View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11582_low_42 (Length: 276)
Name: NF11582_low_42
Description: NF11582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11582_low_42 |
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Alignment Details
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 22138330 - 22138589
Alignment:
| Q |
1 |
cgaagagttatagtcaatcgaatggaatacaagaatgaaactcaaactaattaacaggaagattacatgtctgtagtgcagatgggttgacaacagtgac |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
22138330 |
cgaagagttatagtcaatcgaatgtaatacaagaatgaaactcaaactaattaacaggaagattacatgtctgtagtgcagatgagttgacaacagtgac |
22138429 |
T |
|
| Q |
101 |
tatgcgaattttgcaaaattacagagtgtgtcgctttgatttttgcaaaagctacgatttagaactttgacaaaatcattgcatcctcgtcattctaaac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
22138430 |
tatgcgaattttgcaaaattacagagtgtgtcgctttgatttttgcaaaagctacaatttagaactttgacaaaatcattgcatcctcgtcattataaac |
22138529 |
T |
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| Q |
201 |
atacttaatttaactaactacctctgtatgaaacatttgatcgaaattggacgcaacaag |
260 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
22138530 |
atacttaatttaactaactacctctgtatgaaacatttgatcgaaattggacacaacaag |
22138589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 40505839 - 40506098
Alignment:
| Q |
1 |
cgaagagttatagtcaatcgaatggaatacaagaatgaaactcaaactaattaacaggaagattacatgtctgtagtgcagatgggttgacaacagtgac |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
40505839 |
cgaagagttatagtcaatcgaatgtaatacaagaatgaaactcaaactaattaacaggaagattacatgtctgtagtgcagatgagttgacaacagtgac |
40505938 |
T |
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| Q |
101 |
tatgcgaattttgcaaaattacagagtgtgtcgctttgatttttgcaaaagctacgatttagaactttgacaaaatcattgcatcctcgtcattctaaac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
40505939 |
tatgcgaattttgcaaaattacagagtgtgtcgctttgatttttgcaaaagctacaatttagaactttgacaaaatcattgcatcctcgtcattataaac |
40506038 |
T |
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| Q |
201 |
atacttaatttaactaactacctctgtatgaaacatttgatcgaaattggacgcaacaag |
260 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
40506039 |
atacttaatttaactaactacctctgtatgaaacatttgatcgaaattggacacaacaag |
40506098 |
T |
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