View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11582_low_45 (Length: 260)
Name: NF11582_low_45
Description: NF11582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11582_low_45 |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 6 - 246
Target Start/End: Complemental strand, 42035277 - 42035037
Alignment:
| Q |
6 |
agcagcacagattcccctgtaatttcctttctactttttgctctcaaaattccatattttcaagttagagtatatatatttggttgagaactaggtactt |
105 |
Q |
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| T |
42035277 |
agcaacactgattcccctgtaatttcctttctactttttgctctcaaaattccatattttcaagttagagtatatatatttggttgagaactaggtactt |
42035178 |
T |
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| Q |
106 |
aacttattgttatgttattttattaggttaagtacactaaatatttatcatagattatgttaacgtttttaataaatatttatccaaactcactttagac |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42035177 |
aacttattgttatgttattttattaggttaagtacactaaatatttatcatagattatgttaacgtttttaataaatatttatccaaactcactttagac |
42035078 |
T |
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| Q |
206 |
actctatcaaccatgtttctcctctaaggtgagtagttact |
246 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
42035077 |
actctatcaaccatgtttctcctctaaggtgagtagttact |
42035037 |
T |
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